Metagenome Family F081453

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081453
Family Type	Metagenome
Number of Sequences	114
Average Sequence Length	43 residues
Representative Sequence	MSPFFLLAGENIIEKHISANPVCGTNIRAPELAVKGAPGRKCVQ
Number of Associated Samples	101
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.88 %
% of genes near scaffold ends (potentially truncated)	15.79 %
% of genes from short scaffolds (< 2000 bps)	20.18 %
Associated GOLD sequencing projects	100
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.123 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal (28.070 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut (57.895 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.64% β-sheet: 0.00% Coil/Unstructured: 86.36%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF00005	ABC_tran	5.36
PF00440	TetR_N	5.36
PF04525	LOR	4.46
PF00465	Fe-ADH	4.46
PF08281	Sigma70_r4_2	3.57
PF01327	Pep_deformylase	3.57
PF00293	NUDIX	2.68
PF00654	Voltage_CLC	1.79
PF00990	GGDEF	1.79
PF01381	HTH_3	1.79
PF00528	BPD_transp_1	1.79
PF00890	FAD_binding_2	1.79
PF07992	Pyr_redox_2	1.79
PF04542	Sigma70_r2	1.79
PF13635	DUF4143	1.79
PF03796	DnaB_C	0.89
PF14014	DUF4230	0.89
PF01594	AI-2E_transport	0.89
PF03965	Penicillinase_R	0.89
PF01551	Peptidase_M23	0.89
PF13416	SBP_bac_8	0.89
PF06695	Sm_multidrug_ex	0.89
PF03255	ACCA	0.89
PF04647	AgrB	0.89
PF03547	Mem_trans	0.89
PF02518	HATPase_c	0.89
PF12704	MacB_PCD	0.89
PF05569	Peptidase_M56	0.89
PF13531	SBP_bac_11	0.89
PF08501	Shikimate_dh_N	0.89
PF14501	HATPase_c_5	0.89
PF04397	LytTR	0.89
PF13407	Peripla_BP_4	0.89
PF13411	MerR_1	0.89
PF01263	Aldose_epim	0.89
PF13186	SPASM	0.89
PF00072	Response_reg	0.89
PF04471	Mrr_cat	0.89
PF01145	Band_7	0.89
PF04851	ResIII	0.89
PF00488	MutS_V	0.89
PF02384	N6_Mtase	0.89
PF02579	Nitro_FeMo-Co	0.89
PF05717	TnpB_IS66	0.89
PF05598	DUF772	0.89
PF03690	UPF0160	0.89
PF01497	Peripla_BP_2	0.89
PF06180	CbiK	0.89
PF00486	Trans_reg_C	0.89
PF02036	SCP2	0.89
PF01609	DDE_Tnp_1	0.89
PF02368	Big_2	0.89
PF00872	Transposase_mut	0.89
PF13377	Peripla_BP_3	0.89
PF03176	MMPL	0.89
PF13393	tRNA-synt_His	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG4894	Putative phospholipid scramblase YxjI, Tubby2 superfamily	Lipid transport and metabolism [I]	4.46
COG1454	Alcohol dehydrogenase, class IV	Energy production and conversion [C]	4.46
COG1979	Alcohol dehydrogenase YqhD, Fe-dependent ADH family	Energy production and conversion [C]	4.46
COG0371	Glycerol dehydrogenase or related enzyme, iron-containing ADH family	Energy production and conversion [C]	4.46
COG0337	3-dehydroquinate synthetase	Amino acid transport and metabolism [E]	4.46
COG0242	Peptide deformylase	Translation, ribosomal structure and biogenesis [J]	3.57
COG4512	Accessory gene regulator protein AgrB	Transcription [K]	2.68
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	1.79
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	1.79
COG0038	H+/Cl- antiporter ClcA	Inorganic ion transport and metabolism [P]	1.79
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.79
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	1.79
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.89
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.89
COG4592	ABC-type Fe2+-enterobactin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.89
COG3682	Transcriptional regulator, CopY/TcrY family	Transcription [K]	0.89
COG4286	Uncharacterized conserved protein, UPF0160 family	Function unknown [S]	0.89
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.89
COG4558	ABC-type hemin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.89
COG2017	Galactose mutarotase or related enzyme	Carbohydrate transport and metabolism [G]	0.89
COG4594	ABC-type Fe3+-citrate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.89
COG4607	ABC-type enterochelin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.89
COG4822	Cobalamin biosynthesis protein CbiK, Co2+ chelatase	Coenzyme transport and metabolism [H]	0.89
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.89
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.89
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.89
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.89
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.89
COG2426	Uncharacterized membrane protein	Function unknown [S]	0.89
COG2409	Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily	General function prediction only [R]	0.89
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.89
COG1193	dsDNA-specific endonuclease/ATPase MutS2	Replication, recombination and repair [L]	0.89
COG1066	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	Replication, recombination and repair [L]	0.89
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	0.89
COG0825	Acetyl-CoA carboxylase alpha subunit	Lipid transport and metabolism [I]	0.89
COG0679	Predicted permease, AEC (auxin efflux carrier) family	General function prediction only [R]	0.89
COG0676	D-hexose-6-phosphate mutarotase	Carbohydrate transport and metabolism [G]	0.89
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.89
COG0614	ABC-type Fe3+-hydroxamate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.89
COG0305	Replicative DNA helicase	Replication, recombination and repair [L]	0.89
COG0249	DNA mismatch repair ATPase MutS	Replication, recombination and repair [L]	0.89
COG0169	Shikimate 5-dehydrogenase	Amino acid transport and metabolism [E]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.12 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.12 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.12 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	97.37 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	97.37 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	95.61 %
unclassified Firmicutes sensu stricto	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	95.61 %
Firmicutes bacterium AF25-13AC	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium AF25-13AC	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Lachnospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	83.33 %
Firmicutes bacterium AF25-13AC	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium AF25-13AC	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Roseburia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	70.18 %
Firmicutes bacterium AF25-13AC	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium AF25-13AC	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Roseburia faecis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	52.63 %
unclassified Roseburia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia	3.51 %
Firmicutes bacterium AF25-13AC	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium AF25-13AC	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Roseburia faecis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	52.63 %
Roseburia sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	3.51 %
Firmicutes bacterium AF25-13AC	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium AF25-13AC	0.88 %
Unclassified	root	N/A	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2149837023\|STU__NODE_7950_len_3567_cov_10_128960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium AF25-13AC	3625	Open in IMG/M
3300000273\|EM039_1102390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	576	Open in IMG/M
3300000280\|EM221_1011301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	729	Open in IMG/M
3300000286\|EM268_1064275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8809	Open in IMG/M
3300000286\|EM268_1066281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	4577	Open in IMG/M
3300000360\|EM205_1130914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	8463	Open in IMG/M
3300006298\|Ga0099618_100036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	166481	Open in IMG/M
3300006298\|Ga0099618_100036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	166481	Open in IMG/M
3300006312\|Ga0099626_100051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	162963	Open in IMG/M
3300006463\|Ga0100176_1000097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	104648	Open in IMG/M
3300006525\|Ga0101027_100306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	54882	Open in IMG/M
3300006568\|Ga0100215_101419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	21218	Open in IMG/M
3300006568\|Ga0100215_101471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	20448	Open in IMG/M
3300006722\|Ga0101786_101514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3838	Open in IMG/M
3300007098\|Ga0102540_104335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	3289	Open in IMG/M
3300007098\|Ga0102540_105554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	2584	Open in IMG/M
3300007184\|Ga0103258_107021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	3747	Open in IMG/M
3300007184\|Ga0103258_110690	All Organisms → cellular organisms → Bacteria	2253	Open in IMG/M
3300007298\|Ga0104838_100290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	48386	Open in IMG/M
3300007299\|Ga0104319_1000160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	89967	Open in IMG/M
3300007299\|Ga0104319_1000311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	56797	Open in IMG/M
3300007312\|Ga0104941_112139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1174	Open in IMG/M
3300007362\|Ga0104788_115926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1066	Open in IMG/M
3300007501\|Ga0104994_100804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	32520	Open in IMG/M
3300007714\|Ga0105661_1033084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	921	Open in IMG/M
3300008301\|Ga0114871_100110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	93012	Open in IMG/M
3300008383\|Ga0114870_105634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	3223	Open in IMG/M
3300008479\|Ga0114883_1001252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	23503	Open in IMG/M
3300008482\|Ga0115187_100173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	70996	Open in IMG/M
3300008499\|Ga0111012_100235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	56715	Open in IMG/M
3300008725\|Ga0115670_1013422	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	2289	Open in IMG/M
3300011979\|Ga0120379_1000554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	34237	Open in IMG/M
3300011979\|Ga0120379_1001223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	18149	Open in IMG/M
3300011989\|Ga0120380_1000168	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	64869	Open in IMG/M
3300013946\|Ga0117818_1064028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	501	Open in IMG/M
3300014563\|Ga0134418_1036912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	512	Open in IMG/M
3300014571\|Ga0134369_129235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	537	Open in IMG/M
3300014703\|Ga0134387_103769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	2148	Open in IMG/M
3300014706\|Ga0135354_122939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	707	Open in IMG/M
3300014784\|Ga0134413_1025664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	803	Open in IMG/M
3300014798\|Ga0134382_1027247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	887	Open in IMG/M
3300014963\|Ga0134523_1000101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	202874	Open in IMG/M
3300014963\|Ga0134523_1001259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	52507	Open in IMG/M
3300023290\|Ga0256628_105906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	4460	Open in IMG/M
3300023493\|Ga0257031_101310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	20045	Open in IMG/M
3300023494\|Ga0257057_101224	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	16133	Open in IMG/M
3300023497\|Ga0257058_104975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	5043	Open in IMG/M
3300023497\|Ga0257058_107935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3215	Open in IMG/M
3300023545\|Ga0257041_101393	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	19917	Open in IMG/M
3300023719\|Ga0257059_109523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2540	Open in IMG/M
3300028048\|Ga0256405_10002404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	43277	Open in IMG/M
3300028048\|Ga0256405_10003287	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	33807	Open in IMG/M
3300028968\|Ga0169714_101803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	9855	Open in IMG/M
3300029011\|Ga0169594_100070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	88822	Open in IMG/M
3300029018\|Ga0169593_100138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	63947	Open in IMG/M
3300029018\|Ga0169593_100235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	43375	Open in IMG/M
3300029039\|Ga0169649_100373	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	37399	Open in IMG/M
3300029040\|Ga0169694_100538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	37385	Open in IMG/M
3300029042\|Ga0169701_100314	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	46689	Open in IMG/M
3300029045\|Ga0169661_112229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	1685	Open in IMG/M
3300029053\|Ga0169665_100423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	41969	Open in IMG/M
3300029054\|Ga0169633_100067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	133296	Open in IMG/M
3300029058\|Ga0169611_101024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	23129	Open in IMG/M
3300029059\|Ga0169653_100249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	55652	Open in IMG/M
3300029082\|Ga0169230_100177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	38525	Open in IMG/M
3300029098\|Ga0169171_100058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	166589	Open in IMG/M
3300029106\|Ga0169216_139292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	835	Open in IMG/M
3300029117\|Ga0168818_100031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	219849	Open in IMG/M
3300029119\|Ga0168816_101276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	20257	Open in IMG/M
3300029120\|Ga0168814_110479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	2174	Open in IMG/M
3300029121\|Ga0168811_127703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	614	Open in IMG/M
3300029124\|Ga0169224_1000191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	47993	Open in IMG/M
3300029128\|Ga0168745_100082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	168103	Open in IMG/M
3300029129\|Ga0168797_103400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5782	Open in IMG/M
3300029136\|Ga0168747_100138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	144828	Open in IMG/M
3300029187\|Ga0168669_100023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	203033	Open in IMG/M
3300029188\|Ga0169196_100043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	158105	Open in IMG/M
3300029218\|Ga0168718_100078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	152581	Open in IMG/M
3300029229\|Ga0167470_100122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	132875	Open in IMG/M
3300029230\|Ga0168685_107269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2652	Open in IMG/M
3300029245\|Ga0168762_127985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	925	Open in IMG/M
3300029256\|Ga0168827_102719	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	10658	Open in IMG/M
3300029316\|Ga0242768_100175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	98818	Open in IMG/M
3300029332\|Ga0243782_101797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	18423	Open in IMG/M
3300029339\|Ga0242823_1000495	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	65678	Open in IMG/M
3300029340\|Ga0243727_1006443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	4811	Open in IMG/M
3300029340\|Ga0243727_1052388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	777	Open in IMG/M
3300029342\|Ga0243726_1042021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	1060	Open in IMG/M
3300029350\|Ga0243859_100111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	129094	Open in IMG/M
3300029374\|Ga0243945_1000039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	182349	Open in IMG/M
3300029376\|Ga0243980_1000054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	206986	Open in IMG/M
3300029415\|Ga0243378_1005638	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2901	Open in IMG/M
3300029444\|Ga0243728_1061573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	680	Open in IMG/M
3300029475\|Ga0244097_100376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	58761	Open in IMG/M
3300029513\|Ga0244810_106586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	3205	Open in IMG/M
3300029517\|Ga0244792_100081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	136934	Open in IMG/M
3300029532\|Ga0244902_100046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	161319	Open in IMG/M
3300029536\|Ga0244918_100067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	150000	Open in IMG/M
3300029560\|Ga0244856_100019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	241368	Open in IMG/M
3300029576\|Ga0245100_132921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	873	Open in IMG/M
3300029586\|Ga0243865_1041462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	705	Open in IMG/M
3300029607\|Ga0244907_100263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	76171	Open in IMG/M
3300029612\|Ga0245127_100098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	142978	Open in IMG/M
3300029612\|Ga0245127_100098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	142978	Open in IMG/M
3300029617\|Ga0245125_155844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	558	Open in IMG/M
3300029622\|Ga0245124_1000583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	65096	Open in IMG/M
3300029671\|Ga0245181_100040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	229852	Open in IMG/M
3300029686\|Ga0245204_100166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	128358	Open in IMG/M
3300029794\|Ga0243854_1046300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	915	Open in IMG/M
3300029830\|Ga0245137_101011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	26041	Open in IMG/M
3300029844\|Ga0245276_1041725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	833	Open in IMG/M
3300029845\|Ga0245277_1007423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	5173	Open in IMG/M
7000000145\|SRS050422_LANL_scaffold_88552	All Organisms → cellular organisms → Bacteria	2153	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Habitat	Taxonomy	Distribution
Human	Host-Associated → Human	95.61%
Mammals	Host-Associated → Mammals	4.39%

Habitat	Taxonomy	Distribution
Digestive System	Host-Associated → Human → Digestive System	95.61%
Digestive System	Host-Associated → Mammals → Digestive System	4.39%

Habitat	Taxonomy	Distribution
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	94.74%
Foregut	Host-Associated → Mammals → Digestive System → Foregut	4.39%
Unclassified	Host-Associated → Human → Digestive System → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	93.86%
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen	4.39%
Unclassified	Host-Associated → Human → Digestive System → Large Intestine → Unclassified	0.88%
Unclassified	Host-Associated → Human → Digestive System → Unclassified → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Human Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal	28.07%
Human	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human	22.81%
Human Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated	14.91%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	11.40%
Human Feces	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces	10.53%
Human Gut	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut	6.14%
Sheep Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen	2.63%
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen	1.75%
Human Colon Tissue	Host-Associated → Human → Digestive System → Large Intestine → Unclassified → Human Colon Tissue	0.88%
Human Gut	Host-Associated → Human → Digestive System → Unclassified → Unclassified → Human Gut	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2149837023	Human fecal microbial communities from the University of Arizona (HMP) - UAm1	Host-Associated	Open in IMG/M
3300000273	Human fecal microbial communities from Cork, Ireland - EM039	Host-Associated	Open in IMG/M
3300000280	Human fecal microbial communities from Cork, Ireland - EM221	Host-Associated	Open in IMG/M
3300000286	Human fecal microbial communities from Cork, Ireland - EM268	Host-Associated	Open in IMG/M
3300000360	Human fecal microbial communities from Cork, Ireland - EM205	Host-Associated	Open in IMG/M
3300006298	Human stool microbial communities from NIH, USA - visit 1, subject 737052003	Host-Associated	Open in IMG/M
3300006312	Human stool microbial communities from NIH, USA - visit 2 of subject 159753524	Host-Associated	Open in IMG/M
3300006463	Human stool microbial communities from NIH, USA - visit 2 of subject 159207311	Host-Associated	Open in IMG/M
3300006525	Human stool microbial communities from NIH, USA - visit 2, subject 764062976	Host-Associated	Open in IMG/M
3300006568	Human stool microbial communities from NIH, USA - visit 2 of subject 765074482 replicate 2	Host-Associated	Open in IMG/M
3300006722	Human stool microbial communities from NIH, USA - visit 2, subject 686765762	Host-Associated	Open in IMG/M
3300007098	Human stool microbial communities from NIH, USA - visit 1, subject 765135172	Host-Associated	Open in IMG/M
3300007184	Human stool microbial communities from NIH, USA - visit 2, subject 763536994	Host-Associated	Open in IMG/M
3300007298	Human stool microbial communities from NIH, USA - visit 1, subject 160603188 reassembly	Host-Associated	Open in IMG/M
3300007299	Human stool microbial communities from NIH, USA - visit 1, subject 160765029 reassembly	Host-Associated	Open in IMG/M
3300007312	Human stool microbial communities from NIH, USA - visit 1, subject 159247771 reassembly	Host-Associated	Open in IMG/M
3300007362	Human stool microbial communities from NIH, USA - visit 1, subject 675950834 reassembly	Host-Associated	Open in IMG/M
3300007501	Human stool microbial communities from NIH, USA - visit 1, subject 764285508 reassembly	Host-Associated	Open in IMG/M
3300007714	Human stool microbial communities from NIH, USA - visit 2, subject 763678604 reassembly	Host-Associated	Open in IMG/M
3300008301	Human stool microbial communities from NIH, USA - visit 1, subject 763820215 reassembly	Host-Associated	Open in IMG/M
3300008383	Human stool microbial communities from NIH, USA - visit 2, subject 764042746 reassembly	Host-Associated	Open in IMG/M
3300008479	Human stool microbial communities from NIH, USA - visit 2, subject 763577454 reassembly	Host-Associated	Open in IMG/M
3300008482	Human stool microbial communities from NIH, USA - visit 2, subject 159490532 reassembly	Host-Associated	Open in IMG/M
3300008499	Human stool microbial communities from NIH, USA - visit 1, subject 159490532 reassembly	Host-Associated	Open in IMG/M
3300008725	Human stool microbial communities from NIH, USA - visit 1, subject 763678604 reassembly	Host-Associated	Open in IMG/M
3300011979	Sheep rumen microbial communities from Wyoming, USA - O_aries_Con_1396	Host-Associated	Open in IMG/M
3300011989	Sheep rumen microbial communities from Wyoming, USA - O_aries_Con_7429	Host-Associated	Open in IMG/M
3300013946	Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 314	Host-Associated	Open in IMG/M
3300014563	Human fecal microbial communities from obese patients in Germany - AS45_24	Host-Associated	Open in IMG/M
3300014571	Human fecal microbial communities from obese patients in Germany - AS60_0	Host-Associated	Open in IMG/M
3300014703	Human fecal microbial communities from obese patients in Germany - AS65_0	Host-Associated	Open in IMG/M
3300014706	Human colon tissue microbial communities from Howard University Cancer Center, USA - CC0995	Host-Associated	Open in IMG/M
3300014784	Human fecal microbial communities from obese patients in Germany - AS63_18	Host-Associated	Open in IMG/M
3300014798	Human fecal microbial communities from obese patients in Germany - AS58_0	Host-Associated	Open in IMG/M
3300014803	Human fecal microbial communities from obese patients in Germany - AS68_24	Host-Associated	Open in IMG/M
3300014963	Human fecal microbial communities from elderly subjects during probiotic consumption in Boston, USA - meta_42827d56	Host-Associated	Open in IMG/M
3300023290	Human gut microbial communities from healthy child feces in Northridge, California, USA -- CDI_10B	Host-Associated	Open in IMG/M
3300023493	Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_13A	Host-Associated	Open in IMG/M
3300023494	Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_85A	Host-Associated	Open in IMG/M
3300023497	Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_92A	Host-Associated	Open in IMG/M
3300023545	Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_198C	Host-Associated	Open in IMG/M
3300023719	Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_93C	Host-Associated	Open in IMG/M
3300028048	Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_02	Host-Associated	Open in IMG/M
3300028968	Human fecal microbial communities from infant at 12 months in Denmark - 504_12M	Host-Associated	Open in IMG/M
3300029011	Human fecal microbial communities from infant at 12 months in Denmark - 258_12M	Host-Associated	Open in IMG/M
3300029018	Human fecal microbial communities from mother in Denmark - 256_M	Host-Associated	Open in IMG/M
3300029039	Human fecal microbial communities from mother in Denmark - 335_M	Host-Associated	Open in IMG/M
3300029040	Human fecal microbial communities from infant at 12 months in Denmark - 39_12M	Host-Associated	Open in IMG/M
3300029042	Human fecal microbial communities from mother in Denmark - 39_M	Host-Associated	Open in IMG/M
3300029045	Human fecal microbial communities from mother in Denmark - 343_M	Host-Associated	Open in IMG/M
3300029053	Human fecal microbial communities from mother in Denmark - 345_M	Host-Associated	Open in IMG/M
3300029054	Human fecal microbial communities from mother in Denmark - 281_M	Host-Associated	Open in IMG/M
3300029058	Human fecal microbial communities from mother in Denmark - 268_M	Host-Associated	Open in IMG/M
3300029059	Human fecal microbial communities from mother in Denmark - 338_M	Host-Associated	Open in IMG/M
3300029082	Human fecal microbial communities from infant at 12 months in Denmark - 184_12M	Host-Associated	Open in IMG/M
3300029098	Human fecal microbial communities from infant at 12 months in Denmark - 10_12M	Host-Associated	Open in IMG/M
3300029106	Human fecal microbial communities from mother in Denmark - 172_M	Host-Associated	Open in IMG/M
3300029117	Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021213-32	Host-Associated	Open in IMG/M
3300029119	Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021211-26	Host-Associated	Open in IMG/M
3300029120	Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021209-24	Host-Associated	Open in IMG/M
3300029121	Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021205-19	Host-Associated	Open in IMG/M
3300029124	Human fecal microbial communities from mother in Denmark - 180_M	Host-Associated	Open in IMG/M
3300029128	Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012243-142	Host-Associated	Open in IMG/M
3300029129	Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019855-113	Host-Associated	Open in IMG/M
3300029136	Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012245-136	Host-Associated	Open in IMG/M
3300029187	Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002600-16	Host-Associated	Open in IMG/M
3300029188	Human fecal microbial communities from infant at 12 months in Denmark - 133_12M	Host-Associated	Open in IMG/M
3300029218	Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012062-30	Host-Associated	Open in IMG/M
3300029229	Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021220-43	Host-Associated	Open in IMG/M
3300029230	Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002668-39	Host-Associated	Open in IMG/M
3300029245	Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019817-21	Host-Associated	Open in IMG/M
3300029256	Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021226-74	Host-Associated	Open in IMG/M
3300029316	Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 006_6_2_stool_1	Host-Associated	Open in IMG/M
3300029332	Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 042_10_27_stool_1	Host-Associated	Open in IMG/M
3300029339	Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 015_6_2_stool_1	Host-Associated	Open in IMG/M
3300029340	Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 025_10_28_stool_1	Host-Associated	Open in IMG/M
3300029342	Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 025_10_27_stool_1	Host-Associated	Open in IMG/M
3300029350	Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 063_3_11_stool_2	Host-Associated	Open in IMG/M
3300029374	Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 080_4_27_stool_1	Host-Associated	Open in IMG/M
3300029376	Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 091_4_29_stool_1	Host-Associated	Open in IMG/M
3300029415	Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-6_Run5	Host-Associated	Open in IMG/M
3300029444	Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 025_10_29_stool_1	Host-Associated	Open in IMG/M
3300029475	Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001852-102	Host-Associated	Open in IMG/M
3300029513	Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005377-43	Host-Associated	Open in IMG/M
3300029517	Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005359-14	Host-Associated	Open in IMG/M
3300029532	Human fecal microbial communities from Shanghai, China - P022V6	Host-Associated	Open in IMG/M
3300029536	Human fecal microbial communities from Shanghai, China - P032V6	Host-Associated	Open in IMG/M
3300029560	Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI022001-62	Host-Associated	Open in IMG/M
3300029576	Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35512	Host-Associated	Open in IMG/M
3300029586	Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 063_3_9_stool_1	Host-Associated	Open in IMG/M
3300029607	Human fecal microbial communities from Shanghai, China - P025V1	Host-Associated	Open in IMG/M
3300029612	Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35741	Host-Associated	Open in IMG/M
3300029617	Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35739	Host-Associated	Open in IMG/M
3300029622	Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35733	Host-Associated	Open in IMG/M
3300029671	Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37190R1	Host-Associated	Open in IMG/M
3300029686	Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37305R1	Host-Associated	Open in IMG/M
3300029794	Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 053_3_14_stool_2	Host-Associated	Open in IMG/M
3300029830	Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36034	Host-Associated	Open in IMG/M
3300029844	Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35734	Host-Associated	Open in IMG/M
3300029845	Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35990	Host-Associated	Open in IMG/M
7000000145	Human stool microbial communities from NIH, USA - visit 2, subject 763536994	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
STU_0411.00003100	2149837023	Human Fecal	MYPFFLLAGDNIIEKHISANPVCGTNIRAPELAVKGAPGRKCVQ
EM039_11023902	3300000273	Human Fecal	MSPFFLLAGENIIEKHISANPVCGTNIKAPEPAVKGAPGRKFV*
EM221_10113011	3300000280	Human Fecal	LLAGENIIEKHISANPVCGTNIKAPEPAVKGTPGRKFM*
EM268_106427510	3300000286	Human Fecal	AGDNIIEKHISANPVCRTNIRAPELAVKGAPGRKCVQ*
EM268_10662814	3300000286	Human Fecal	MSPFFLWIGENIIEKYISANPVCGTNIKEPELAVKGTPQKQLRIP*
EM205_11309146	3300000360	Human Fecal	MYPFFLLAGENIIEKHISANPVYVTNIKAPELAVKGAPGRKCIQ*
Ga0099618_10003625	3300006298	Human	MFPFFLLAGENIIEKHISANPVCGTNIKAPEPAVKGTPGRKFM*
Ga0099618_10003663	3300006298	Human	MSPFFLLAGDNIIEKHISANPVCGTNIRAPELAVKGAPGRKCIQ*
Ga0099626_10005188	3300006312	Human	MSPFFLLAGDNIIEKHISANPVCGTNIRAPELAVKGAPGRKCVQ*
Ga0100176_100009716	3300006463	Human	MSPFFLLAGDNIIEKHISANPVCGTNIRASELAVKGAPGRKCVQ*
Ga0101027_10030624	3300006525	Human	MSPFFLLAGDNIIEKHISANPVYVTNIKAPELAVKGAPGRKCIQ*
Ga0100215_10141911	3300006568	Human	MYPFFLLAGNNIIEKHISANPVCGTNIRAPELAVKGAPGRKCIQ*
Ga0100215_10147125	3300006568	Human	MFPFFLLAGENIIEKHISANPVCGTNIKAPEPATKGAPGRKFV*
Ga0101786_1015147	3300006722	Human	MFPFFLFAGENIIEKHISANPVCGTNIKAPEPAVKGTPGRKFM*
Ga0102540_1043355	3300007098	Human	MSPFFLLAGENIIEKHISANPVCGTNIKAPEPAVKGTPGRKFM*
Ga0102540_1055545	3300007098	Human	MSPFFLWIGENIVEKYISANPVCGTNIKAPELAVKGAPGRNCVQ*
Ga0103258_1070211	3300007184	Human	MFPFFLLAGENIIEKHISANPVCGTNIKAPEPAVKGAPGRKFM*
Ga0103258_1106904	3300007184	Human	FFLLAGDNILEKHISANPVCRTNIRAPELAVKGALGRKCVQ*
Ga0104838_10029027	3300007298	Human	MFPFFLLAGENIIEKHISANPVCGTNIKAPEPAVKGAPGRKFV*
Ga0104319_100016083	3300007299	Human	MYPFFLLAGDNIIEKHISANPVCGTNIRAPELAVKGAPGRKCVQ*
Ga0104319_100031137	3300007299	Human	MFPFFLLDGENIIEKHISANPVCGTNIKAPEPAVKGTPGRKFM*
Ga0104941_1121393	3300007312	Human	MSPFFLLAGENIIEKHISANPVYVTNIKAPELAVKGAPGRKCIQ*
Ga0104788_1159262	3300007362	Human	MSPFFLLAGDNIIEKHISANPVCGTNIKAPEPAVKGTPGRKFM*
Ga0104994_1008047	3300007501	Human	MSPFFLLAGDNIIEKHISANPVCRTNIRAPELAVKGALGRKCIQ*
Ga0105661_10330841	3300007714	Human	MSPFFLLAGDNIIEKHISANPVCGINIKAPKPTVKGAPGRKCIQ*
Ga0114871_10011027	3300008301	Human	MFPFFLLAGENIIEKHIFANPVCGTNIKAPEPAVKVTPGRKFM*
Ga0114870_1056341	3300008383	Human	MSPFFLWIGENIIEKYISANPVYVTNIKAPEFAVKG*
Ga0114883_10012521	3300008479	Human	MSPFFLLAGDNIIEKHISANPVCGTNIRAPELAVKSAPGRKCVQ*
Ga0115187_10017355	3300008482	Human	MYPFFLLAGENIIGKHTLANPVCGTNIKAPELAVKGAPEKDIRIP*
Ga0111012_10023555	3300008499	Human	MFPFFLLAGENIIEKHISANPVCGTNIKASEPAVKGTPGRKFM*
Ga0115670_10134223	3300008725	Human	MFPFFLLAGENIIEKHISANPVCGINIKAPKPTVKGAPGRKCIQ*
Ga0120379_100055429	3300011979	Sheep Rumen	LLIGETISKRMTPANPVYGTNIKAPEIAVKGAPGRKCV*
Ga0120379_10012232	3300011979	Sheep Rumen	MFPFFLLAGENIIEKHISANPVCGTNIKAPEPAVKGIPGRKFT*
Ga0120380_100016832	3300011989	Sheep Rumen	MPPFFLLIGETISKRMTPANPVYGTNIKAPEIAVKGAPGRKCV*
Ga0117818_10640281	3300013946	Human Gut	PKERSPFFLLAGDNIIEKHISANPVCGTNIRAPELAVKGAPGRKCIQ*
Ga0134418_10369122	3300014563	Human Fecal	MSPFFLWIGENIVEKYISANPVCGTNIKAPEPAVKGTPGRKFM*
Ga0134369_1292351	3300014571	Human Fecal	MSPFFLLAGDNIIEKHISANPVCGTNIKAPEPAVKGTPQKQLRIP*
Ga0134387_1037692	3300014703	Human Fecal	MSPFFLWIGENIVEKYISANPVCGTNIRAPELAVKGAPGRKCVQ*
Ga0135354_1229391	3300014706	Human Colon Tissue	MSPFFLLAGDNIIEKHISANPVCGTNIRAPELAVK
Ga0134413_10256641	3300014784	Human Fecal	MSPFFLWIGENIIEKYISANPVCGTNIKAPEPAVKGTPQKQLRIP*
Ga0134382_10272472	3300014798	Human Fecal	MSPFFLLAGENIIEKHISANPVCGTNIRAPELAVKGTPQKQLRIP*
Ga0134430_10194673	3300014803	Human Fecal	MSPFFLWIGKTISKRMMSANPVCGTNIKAPEPAVKGTPQKQLRIP*
Ga0134523_100010123	3300014963	Human Fecal	MFPFFLFAGENIIEKHISANPVCGTNIKAPEPAVKGAPGRKFM*
Ga0134523_100125927	3300014963	Human Fecal	MSPFFLLAGDNIIEKHISANPVCRTNIRAPELAVKGAPGRKCVQ*
Ga0256628_1059064	3300023290	Human Gut	MFPFFLLAGENIIEKHISANPVCGTNIKAPEPAVKGAPGRKFM
Ga0257031_10131024	3300023493	Human Gut	MSPFFLLAGDNIIEKHISANPVCGTNIRAPELAVKSAPGRKCVQ
Ga0257057_1012241	3300023494	Human Gut	MSPFFLLAGDNIIEKHISANPVCGTNIRAPELAVKGAPGRKCVQ
Ga0257058_1049751	3300023497	Human Gut	MYPFFLLAGNNIIEKHISANPVCGTNIRAPELAVKGAPGRKCIQ
Ga0257058_1079355	3300023497	Human Gut	MFPFFLFAGENIIEKHISANPVCGTNIKAPEPAVKGTPGRKFM
Ga0257041_10139322	3300023545	Human Gut	MSPFFLLAGDNIIEKHISANPVCGTNIRAPELAVKGAPGRKCIQ
Ga0257059_1095231	3300023719	Human Gut	MFPFFLFAGENIIEKHISANPVCGTNIRAPELAVKGAPGRKCIQ
Ga0256405_1000240411	3300028048	Rumen	MPPFFLLIGETISKRMTPANPVYGTNIKAPEIAVKGASGRKCV
Ga0256405_1000328729	3300028048	Rumen	MFPFFLLAGENIIEKHISANPVCGTNIKAPEPAVKGIPGRKFT
Ga0169714_1018039	3300028968	Human Host-Associated	MFPFFLLAGENIIEKHISANPVCGTNIKAPEPAVKGTPGRKFM
Ga0169594_10007055	3300029011	Human Host-Associated	MFPFFLLAGENIIEKHISANPVCGTNIKAPEPAVKGAPGRKFV
Ga0169593_10013851	3300029018	Human Host-Associated	MSPFFLLAGDNIIEKHISANPVCRTNIRAPELAVKGALGRKCVQ
Ga0169593_1002354	3300029018	Human Host-Associated	MFPFFLLAGENIIEKHISANPVCGINIKAPKPTVKGAPGRKCIQ
Ga0169649_10037333	3300029039	Human Host-Associated	MSPFFLLAGDNIIEKHIFANPVCGTNIRAPELAVKGAPGRKCIQ
Ga0169694_10053827	3300029040	Human Host-Associated	MSPFFLLAGDNIIEKHISANPVYVTNIKAPELAVKGAPGRKCIQ
Ga0169701_10031427	3300029042	Human Host-Associated	MYPFFLLAGENIIGKHTLANPVCGTNIKAPEPAVKGTPQKQLRIP
Ga0169661_1122293	3300029045	Human Host-Associated	MFPFFLLAGENIIEKHIFANPVCGTNIKAPEPAVKVTPGRKFM
Ga0169665_10042351	3300029053	Human Host-Associated	MSPFFLWIGENIVEKYISANPVCGTNIQPPEPAVKGAPGRKCIQ
Ga0169633_10006742	3300029054	Human Host-Associated	MYPFFLLAGENIIEKHISANPVYVTNIKAPELAVKGAPGRKCIQ
Ga0169611_10102413	3300029058	Human Host-Associated	MSPFFLLAGDNIIEKHISANPVCRTNIRAPELAVKGALGRKCIQ
Ga0169653_1002496	3300029059	Human Host-Associated	MFPFFLLAGENIIEKHIFANPVCGTNIKAPEPAVKGTPGRKFM
Ga0169230_10017718	3300029082	Human Host-Associated	MYPFFLLAGDNIIEKHISANPVCGTNIRAPELAVKGAPGRKCIQ
Ga0169171_10005860	3300029098	Human Host-Associated	MSPFFLLAGDNIIEKHISANPVYVTNIKAPELAVKGAPGRKCVQ
Ga0169216_1392922	3300029106	Human Host-Associated	MSPFFLLAGENIIEKHISANPVCGTNIRAPELAVKGAPGRKCVQ
Ga0168818_100031158	3300029117	Host-Associated	MFPFFLLAGENIIEKHISANPVCGTNIRAPELAVKGAPGRKCVQ
Ga0168816_10127614	3300029119	Host-Associated	MSPFFLLAGDNIIEKHISANPVCRTNIRAPELAVKGAPGRKCVQ
Ga0168814_1104793	3300029120	Host-Associated	LLAGENIIEKHISANPVCGTNIKAPEPAVKGAPGRKFV
Ga0168811_1277032	3300029121	Host-Associated	FLLAGDNIIEKHISANPVCGTNIRAPELAVKGAPGRKCIQ
Ga0169224_10001917	3300029124	Human Host-Associated	MYPFFLLAGENIVEKYISANPVCGTNIRAPELAVKGAPGRKCVQ
Ga0168745_10008281	3300029128	Host-Associated	MSPFFLLAGDNIIEKHISANPVCGTNIRAPELAVKGALGRKCVQ
Ga0168797_1034007	3300029129	Host-Associated	MFPFFLLAGENIIEKHISANPVCGTNIKAPESAVKGAPGRKFV
Ga0168747_10013824	3300029136	Host-Associated	MFPFFLLVGENIIEKHISANPVCGTNIKAPEPAVKGAPGRKFV
Ga0168669_10002366	3300029187	Host-Associated	MSPFFLLAGNNIIEKHISANPVCGTNIRAPELAVKGAPGRKCIQ
Ga0169196_10004379	3300029188	Human Host-Associated	MYPFFLLAGDNIIEKHISANPVCRTNIRAPELAVKGALGRKCVQ
Ga0168718_10007866	3300029218	Host-Associated	MYPFFLLAGENIVEKYISANPVCGTNIKAPELAVKGAPGRNCVQ
Ga0167470_10012288	3300029229	Host-Associated	MYPFFLLAGENIIGKHTLANPVCGTNIKAPELAVKGAPEKDIRIP
Ga0168685_1072694	3300029230	Host-Associated	MYPFFLLAGENIIGKHTLANPVXXXXXXXNIKAPELAVKGAPEKDIRIP
Ga0168762_1279851	3300029245	Host-Associated	MSPFFLWIGENIIEKYISANPVYVTNIKAPEFAVKGAPGRKCIQ
Ga0168827_10271913	3300029256	Host-Associated	MFPFFLLAGENIIEKHISENPVCGTNIKAPEPAVKGAPGRKFV
Ga0242768_1001751	3300029316	Human Feces	KEMSPFFLWIGENIVEKYISANPVCGTNIKAPELAVKGAPGRNCVQ
Ga0243782_1017972	3300029332	Human Feces	MSPFFLLAGENIIEKHISANPVCGTNIKAPELAVKG
Ga0242823_100049567	3300029339	Human Feces	MSPFFLLAGDNIIEKHISANPVCGTNIRASELAVKGAPGRKCVQ
Ga0243727_10064433	3300029340	Human Feces	MSPFFLLAGDNIIEKHISANPVCGTNIRAPELAVKGAPGSKCIQ
Ga0243727_10523881	3300029340	Human Feces	EMSPFFLLAGENIIEKHISANPVYVTNIKAPELAVKGAPGRKCVQ
Ga0243726_10420212	3300029342	Human Feces	MSPFFLLAGENIIEKHISANPVYVTNIKAPELAVKGAPGRKCVQ
Ga0243859_10011157	3300029350	Human Feces	MSPFFLWIGENIVEKYISANPVCGTNIKAPELAVKGAPGRNCVQ
Ga0243945_1000039161	3300029374	Human Feces	MSPFFLLAGDNIIEKHISANPVYVTNIKALELAVKGAPGRKCVQ
Ga0243980_1000054159	3300029376	Human Feces	MSPFFLWIGENIIEKYISANPVCGTNIKEPELAVKGTPQKQLRIP
Ga0243378_10056381	3300029415	Human Fecal	MSPFFLWIGENIIEKYISANPVYVTNIKAPEFAVKG
Ga0243728_10615731	3300029444	Human Feces	LPKEMSPFFLLAGDNIIEKHISANPVCRTNIRAPELAVKGALGRKCVQ
Ga0244097_1003761	3300029475	Human Fecal	AGENIIEKHISANPVCGTNIRAPELAVKGAPGRKCIQ
Ga0244810_1065866	3300029513	Human Fecal	LPKEMSPFFLWIGENIVEKYISANPVCGTNIQPPEPAVKGAPGRKCIQ
Ga0244792_10008178	3300029517	Human Fecal	MSPFFLLAGENIIEKHISANPVCGTYIRAPELAVKGAPGRKCVQ
Ga0244902_10004683	3300029532	Human Fecal	MSPFFLLAGDNIIEKHISANPVCGTNIRAPELAVKGAPERKCVQ
Ga0244918_100067107	3300029536	Human Fecal	MFPSFLLAGENIIEKHISANPVCGTNIKAPEPAVKGAPGRKFV
Ga0244856_100019158	3300029560	Human Fecal	MSPFFLLAGDNIIEKHISANPVCGTNIRAPELAVKDAP
Ga0245100_1329212	3300029576	Human Fecal	MFPFFLFAGENIIEKHISANPVCGTNIRAPELAVKGAPGRKCVQ
Ga0243865_10414621	3300029586	Human Feces	GENIIEKHISANPVCGTNIKAPEPAVKGAPGRKFM
Ga0244907_10026358	3300029607	Human Fecal	MFPFFLLAGENIIEKHISANSVCGTNIKAPEPAVKGAPGRKFV
Ga0245127_100098116	3300029612	Human Fecal	MFPFFLLAGENIIEKHISANPVCGTNIKAPEPVVKGAPGRKFV
Ga0245127_10009879	3300029612	Human Fecal	MYPFFLLAGENIIEKHISANPVYVTNIKAPELAVKGAPGRKCVQ
Ga0245125_1558441	3300029617	Human Fecal	GENIIEKHISANPVCGINIKAPKPTVKGAPGRKCIQ
Ga0245124_10005837	3300029622	Human Fecal	MSPFFLLAGDNIIEKHISANPVCGTNIRAPELAVKGAP
Ga0245181_100040106	3300029671	Human Fecal	MFPFFLLAGENIIEKHISANPVCGTNIKAPEPAVKVTPGRKFM
Ga0245204_10016689	3300029686	Human Fecal	MSPFFLLAGDNIIKKHISANPVCGTNIRAPELAVKGAPGRKCIQ
Ga0243854_10463002	3300029794	Human Feces	MSPFFLLAGDNIIEKHISANPVCGTNIRASELAVK
Ga0245137_10101119	3300029830	Human Fecal	MSPFFLWIGENIVEKHISANPVCGTNIRAPELAVKGALGRKCVQ
Ga0245276_10417252	3300029844	Human Fecal	LLAGENIIEKHISANPVCXINIKAPEPAVKGAPGR
Ga0245277_10074235	3300029845	Human Fecal	MSPFFLLAGDNIIEKHISANPVCGTNIRAPELAVKGAPGRKCI
SRS050422_LANL_scaffold_88552__gene_157629	7000000145	Human	KEMSPFFLLAGDNIIEKHISANPVCRTNIRAPELAVKGALGRKCVQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F081453

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences