3300029018: Human fecal microbial communities from mother in Denmark - 256_M

Overview

Basic Information

• IMG/M Taxon OID: 3300029018
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193587 | Ga0169593
• Sample Name: Human fecal microbial communities from mother in Denmark - 256_M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 94047281
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.676097
  • Long. (^o): 12.568337
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081453	Metagenome	114	N
F089054	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169593_100099	Not Available	85064
Ga0169593_100138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	63947
Ga0169593_100235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	43375

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169593_100099	Ga0169593_10009965	F089054	MLTKGKFLVSFEVPGHTKEYTEGFTEEMVIPYRTEELNPYLRYPNQEINNNHLHSEHIRLQIREILQIPLTDITIIDIISLP
Ga0169593_100138	Ga0169593_10013851	F081453	MSPFFLLAGDNIIEKHISANPVCRTNIRAPELAVKGALGRKCVQ
Ga0169593_100235	Ga0169593_1002354	F081453	MFPFFLLAGENIIEKHISANPVCGINIKAPKPTVKGAPGRKCIQ