3300029517: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005359-14

Overview

Basic Information

• IMG/M Taxon OID: 3300029517
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283415 | Ga0244792
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005359-14
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 170001014
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067845	Metagenome	125	N
F068811	Metagenome	124	N
F071325	Metagenome	122	N
F081453	Metagenome	114	N
F092227	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244792_100081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	136934
Ga0244792_100371	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	59440
Ga0244792_102676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	10044
Ga0244792_102964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	9039
Ga0244792_103837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	6793

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244792_100081	Ga0244792_10008178	F081453	MSPFFLLAGENIIEKHISANPVCGTYIRAPELAVKGAPGRKCVQ
Ga0244792_100371	Ga0244792_1003719	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELARQLGVAYAPELDNTAKAVAEWFVQEPDSLQVSGLDLVYTVALDADSNMGHTDDLNAFLYWSGCYGVPKDVTVALLLDDSAAMTAWLYAPQADSAAAELLDDAVGHSEMGAAFIDYNGTAYVVAVFR
Ga0244792_102676	Ga0244792_1026764	F068811	MDQDESEHNICSNREGLCPGKKQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRI
Ga0244792_102964	Ga0244792_1029645	F092227	MNEQKRKRALRIGCLVLAGVFVLSLLXXXGSIFMMLPL
Ga0244792_103837	Ga0244792_1038371	F071325	PSRLRFHKFQYCSIFKVLLALLSDSSIIIPKVVLFVKHFFRYFFELSKRLLKAFHPHAVRFPAAFLLMHRFYLAFEELLSCATAYL