NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

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HMMER

HMMER Search

Sequence vs Sequence Database

Step 1. Paste your sequence(s) in the form below:

Note: Sequences must be in FASTA format.

or upload a file with your sequence(s): Load Example

Step 2. Define Search Options:

Select Dataset to search:

Search Method: phmmer jackhmmer (iterative, more sensitive but slower)

Substitution Matrix:

Gap Penalties: Open: Extend:

Step 3. Define Significance Options:

Cut-off Type: Bit-score E-value

Report Cut-off:
Sequence: Domain:

Inclusion (significance) Cut-off:
Sequence: Domain:

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Sequence vs profile HMMs Database

Step 1. Paste your sequence(s) in the form below:

Note: Sequences must be in FASTA format.
or upload a file with your sequence(s): Load Example

Step 2. Define Search Options:

Select Dataset to search:

Step 3. Define Significance Options:

Cut-off Type: Bit-score E-value

Report Cut-off:
Sequence: Domain:

Inclusion (significance) Cut-off:
Sequence: Domain:

Run in new tab

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