Sample 3300029039

Overview

Basic Information
IMG/M Taxon OID	3300029039 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127429 \| Gp0193643 \| Ga0169649
Sample Name	Human fecal microbial communities from mother in Denmark - 335_M
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	158640502
Sequencing Scaffolds	9
Novel Protein Genes	9
Associated Families	8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	Denmark
Coordinates	Lat. (^o)	55.678	Long. (^o)	12.531	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F039198	Metagenome	164	Y
F068811	Metagenome	124	N
F078693	Metagenome	116	N
F081453	Metagenome	114	N
F087335	Metagenome	110	N
F089054	Metagenome	109	N
F092227	Metagenome	107	N
F097493	Metagenome	104	Y

Family

Category

Number of Sequences

3D Structure?

F039198

Metagenome

164

F068811

Metagenome

124

F078693

Metagenome

116

F081453

Metagenome

114

F087335

Metagenome

110

F089054

Metagenome

109

F092227

Metagenome

107

F097493

Metagenome

104

Scaffold	Taxonomy	Length	IMG/M Link
Ga0169649_100170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	60683	Open in IMG/M
Ga0169649_100373	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	37399	Open in IMG/M
Ga0169649_100625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	25581	Open in IMG/M
Ga0169649_100882	Not Available	19818	Open in IMG/M
Ga0169649_101544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	12971	Open in IMG/M
Ga0169649_103412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6541	Open in IMG/M
Ga0169649_104433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	5256	Open in IMG/M
Ga0169649_119675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1510	Open in IMG/M
Ga0169649_133574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	908	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0169649_100170

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

60683

Open in IMG/M

Ga0169649_100373

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis

37399

Open in IMG/M

Ga0169649_100625

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

25581

Open in IMG/M

Ga0169649_100882

Not Available

19818

Open in IMG/M

Ga0169649_101544

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium

12971

Open in IMG/M

Ga0169649_103412

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

6541

Open in IMG/M

Ga0169649_104433

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

5256

Open in IMG/M

Ga0169649_119675

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

1510

Open in IMG/M

Ga0169649_133574

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

908

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0169649_100170	Ga0169649_10017059	F092227	MNEQKHKRWMRIGCLVLAGVFALSLLSSVIMMLLY
Ga0169649_100373	Ga0169649_10037333	F081453	MSPFFLLAGDNIIEKHIFANPVCGTNIRAPELAVKGAPGRKCIQ
Ga0169649_100625	Ga0169649_10062520	F068811	MDQDGSEHNICSNREGLCPGKKQHGAFGWKKIFQHGKEPLRNKDSVSQYCNKKVAASLILNENVSETLCIFSIDKTNCCRI
Ga0169649_100882	Ga0169649_10088221	F089054	MLTSGKFLVSFEVPGPLPGTTEGFCEEMNVVYRTEELNTYLRYPKQQINPWHKHSTHIRLKLREILKVNLTDITIIDIISLP
Ga0169649_101544	Ga0169649_1015448	F087335	MIGLYFNDANVLTENREEEQYAEAALNSILAGKTADTVMCILPCFYDAPLHKGLLYNLDDGTTLQIRPILNEVGEPELLIRCVTEESVETIYQRGSNYD
Ga0169649_103412	Ga0169649_1034125	F039198	MKLTITEIQGTKYVQIYLTEDELQKKETKDLIKKYKQEKYSMAIFVTGKENYPEILGKIITKQVELNRNVC
Ga0169649_104433	Ga0169649_1044333	F078693	MVLAPVRGAERFYVKWNCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGEVEVEKC
Ga0169649_119675	Ga0169649_1196752	F092227	MNEEKRKRILRWGCLILAGVFTLSLLGSVVVMLLV
Ga0169649_133574	Ga0169649_1335742	F097493	MYKFYSKNGTAQFYERGVKIDGTVYGIQKDSDILRIKRGIVNDKFAETDDNFDMDTEIAKIQHTSITFKQPTSEQLSQIQAKTYNSMTELKQHVQSVMNGDEMSQDEINAMLM

Scaffold ID

Protein ID

Family

Sequence

Ga0169649_100170

Ga0169649_10017059

F092227

MNEQKHKRWMRIGCLVLAGVFALSLLSSVIMMLLY

Ga0169649_100373

Ga0169649_10037333

F081453

MSPFFLLAGDNIIEKHIFANPVCGTNIRAPELAVKGAPGRKCIQ

Ga0169649_100625

Ga0169649_10062520

F068811

MDQDGSEHNICSNREGLCPGKKQHGAFGWKKIFQHGKEPLRNKDSVSQYCNKKVAASLILNENVSETLCIFSIDKTNCCRI

Ga0169649_100882

Ga0169649_10088221

F089054

MLTSGKFLVSFEVPGPLPGTTEGFCEEMNVVYRTEELNTYLRYPKQQINPWHKHSTHIRLKLREILKVNLTDITIIDIISLP

Ga0169649_101544

Ga0169649_1015448

F087335

MIGLYFNDANVLTENREEEQYAEAALNSILAGKTADTVMCILPCFYDAPLHKGLLYNLDDGTTLQIRPILNEVGEPELLIRCVTEESVETIYQRGSNYD

Ga0169649_103412

Ga0169649_1034125

F039198

MKLTITEIQGTKYVQIYLTEDELQKKETKDLIKKYKQEKYSMAIFVTGKENYPEILGKIITKQVELNRNVC

Ga0169649_104433

Ga0169649_1044333

F078693

MVLAPVRGAERFYVKWNCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGEVEVEKC

Ga0169649_119675

Ga0169649_1196752

F092227

MNEEKRKRILRWGCLILAGVFTLSLLGSVVVMLLV

Ga0169649_133574

Ga0169649_1335742

F097493

MYKFYSKNGTAQFYERGVKIDGTVYGIQKDSDILRIKRGIVNDKFAETDDNFDMDTEIAKIQHTSITFKQPTSEQLSQIQAKTYNSMTELKQHVQSVMNGDEMSQDEINAMLM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029039: Human fecal microbial communities from mother in Denmark - 335_M

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences