3300029188: Human fecal microbial communities from infant at 12 months in Denmark - 133_12M

Overview

Basic Information

• IMG/M Taxon OID: 3300029188
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193505 | Ga0169196
• Sample Name: Human fecal microbial communities from infant at 12 months in Denmark - 133_12M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 107666727
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.676097
  • Long. (^o): 12.568337
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F081453	Metagenome	114	N
F089053	Metagenome	109	Y
F099451	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169196_100043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	158105
Ga0169196_100202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	70888
Ga0169196_100655	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	30913
Ga0169196_102184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	9515
Ga0169196_105732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2682

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169196_100043	Ga0169196_10004379	F081453	MYPFFLLAGDNIIEKHISANPVCRTNIRAPELAVKGALGRKCVQ
Ga0169196_100202	Ga0169196_10020253	F089053	MEGARPDKFAFSVKLERVVDGCRPIKGCIRKWIYGSANGQPELSTAKEANVKNVEVSL
Ga0169196_100655	Ga0169196_10065534	F099451	MERRFNMEIKNVGQLRKIIENLSDDFEIEMRIRRKLTDEELKNCRYPYPYDTEYLTLEFDDIGVSNKVLCLGVTSNE
Ga0169196_102184	Ga0169196_10218413	F026489	LRADSTKNNLLHVKVGKVVVARGCSLLTPKENQKSASDFDALDPRKRGCSPLLTPKKWATPKKTEDSRLFGVKIF
Ga0169196_105732	Ga0169196_1057322	F026489	VASFADEKFLLAEGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKQRATPEKTEDSRLFGVKIF