3300023290: Human gut microbial communities from healthy child feces in Northridge, California, USA -- CDI_10B

Overview

Basic Information

• IMG/M Taxon OID: 3300023290
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133482 | Gp0295774 | Ga0256628
• Sample Name: Human gut microbial communities from healthy child feces in Northridge, California, USA -- CDI_10B
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Irvine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 135771072
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Child Gut Microbiome
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Northridge, California
• Coordinates
  • Lat. (^o): 34.2381
  • Long. (^o): -118.5301
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047125	Metagenome / Metatranscriptome	150	N
F062845	Metagenome	130	N
F067720	Metagenome	125	Y
F068811	Metagenome	124	N
F070093	Metagenome	123	N
F076189	Metagenome	118	N
F081453	Metagenome	114	N
F092227	Metagenome	107	N
F097493	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0256628_100080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	139176
Ga0256628_100298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	69582
Ga0256628_100390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	58072
Ga0256628_101984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	13427
Ga0256628_105659	Not Available	4650
Ga0256628_105906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	4460
Ga0256628_107627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3456
Ga0256628_110054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2604
Ga0256628_110444	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2505

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256628_100080	Ga0256628_100080105	F047125	MDVALLLMVLGVMVSGFRAADALDHIRREILQQEGKRRGWWS
Ga0256628_100298	Ga0256628_10029849	F097493	MYKFYSKNGTAQFYERGVEIDGTVYGIRTDSDILRIKRSVVNSKFAESEEDFDMNVEIAKIQHMDITLEQPTSEQLSQIQAKTYNSMTELKHHVQSIMNGELTQDEINAMLLLRIAEMEVAITNEQTTN
Ga0256628_100390	Ga0256628_10039050	F092227	MNEQKRKRILRVGCLILAGAFLLSVLGSVILMLLV
Ga0256628_101984	Ga0256628_1019848	F062845	MKKAPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNAVPPSSCA
Ga0256628_105659	Ga0256628_1056597	F067720	MSSTTYFHLGNVTEMYAAQEQFREVTKMVTFCHRFAVLGTMVRNAGQLPQPFWLGAACGGGSCSLSASVARA
Ga0256628_105906	Ga0256628_1059064	F081453	MFPFFLLAGENIIEKHISANPVCGTNIKAPEPAVKGAPGRKFM
Ga0256628_107627	Ga0256628_1076271	F070093	LLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPNYADSIS
Ga0256628_110054	Ga0256628_1100544	F068811	MDQDGSEHNICSNREGLCPGKKQHGASGWKKIFQRGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRIK
Ga0256628_110444	Ga0256628_1104444	F076189	VLSAGHCFFLFPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLRAIQSAQKQLRMLCNFHENTFWLLIFYANYAIL