| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029218 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0127425 | Gp0192983 | Ga0168718 |
| Sample Name | Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012062-30 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Beijing Genomics Institute (BGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 143730064 |
| Sequencing Scaffolds | 22 |
| Novel Protein Genes | 22 |
| Associated Families | 18 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 6 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 4 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 3 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal secretion |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | China: Beijing, Peking Union Medical College | |||||||
| Coordinates | Lat. (o) | 39.911947 | Long. (o) | 116.4156125 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013656 | Metagenome | 269 | Y |
| F026489 | Metagenome | 197 | N |
| F047125 | Metagenome / Metatranscriptome | 150 | N |
| F047755 | Metagenome | 149 | Y |
| F052660 | Metagenome | 142 | N |
| F062845 | Metagenome | 130 | N |
| F067720 | Metagenome | 125 | Y |
| F067845 | Metagenome | 125 | N |
| F077405 | Metagenome | 117 | N |
| F078693 | Metagenome | 116 | N |
| F081453 | Metagenome | 114 | N |
| F087335 | Metagenome | 110 | N |
| F088920 | Metagenome | 109 | Y |
| F089053 | Metagenome | 109 | Y |
| F090515 | Metagenome | 108 | N |
| F092228 | Metagenome | 107 | N |
| F097493 | Metagenome | 104 | Y |
| F099451 | Metagenome | 103 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0168718_100002 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii | 746336 | Open in IMG/M |
| Ga0168718_100078 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis | 152581 | Open in IMG/M |
| Ga0168718_100113 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 120687 | Open in IMG/M |
| Ga0168718_100244 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae | 80555 | Open in IMG/M |
| Ga0168718_100348 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 59721 | Open in IMG/M |
| Ga0168718_100605 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 32306 | Open in IMG/M |
| Ga0168718_101291 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides | 13608 | Open in IMG/M |
| Ga0168718_101302 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia | 13536 | Open in IMG/M |
| Ga0168718_101403 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium | 12412 | Open in IMG/M |
| Ga0168718_101602 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 10769 | Open in IMG/M |
| Ga0168718_101607 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides | 10729 | Open in IMG/M |
| Ga0168718_102062 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 8261 | Open in IMG/M |
| Ga0168718_102129 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 7980 | Open in IMG/M |
| Ga0168718_102270 | All Organisms → cellular organisms → Bacteria | 7470 | Open in IMG/M |
| Ga0168718_102784 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 6149 | Open in IMG/M |
| Ga0168718_103325 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 5161 | Open in IMG/M |
| Ga0168718_104305 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 4102 | Open in IMG/M |
| Ga0168718_105618 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 3248 | Open in IMG/M |
| Ga0168718_105942 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 3091 | Open in IMG/M |
| Ga0168718_112923 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1539 | Open in IMG/M |
| Ga0168718_120466 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis | 1005 | Open in IMG/M |
| Ga0168718_121366 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 965 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0168718_100002 | Ga0168718_100002250 | F092228 | MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGDKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDFVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIICKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGVANSWVKGYLIDQLAIS |
| Ga0168718_100078 | Ga0168718_10007866 | F081453 | MYPFFLLAGENIVEKYISANPVCGTNIKAPELAVKGAPGRNCVQ |
| Ga0168718_100113 | Ga0168718_10011376 | F062845 | MTTKWTEKGDSMKKTPFILHEKFRSDNNEQRKEDFQKEFERYIINGLLNAVPSRACT |
| Ga0168718_100244 | Ga0168718_1002441 | F077405 | LLVAKQRGVFYGFILLCQIKFVKNFFDWLKIIQKQKVRLK |
| Ga0168718_100348 | Ga0168718_10034842 | F067845 | MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMSHTDDLNDFLYWSGCYGVPKDVTVALLLDDSAAMTAWLYAPQADSAAAELLEDAVGHNEMGAAFIDYNGTAYVVAVFR |
| Ga0168718_100605 | Ga0168718_10060512 | F052660 | MCILRVLPKNTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGRFFYGGILMGIALPIPSHRAKSHDFAHWWPAAAGHSRSADALPGKSNS |
| Ga0168718_101291 | Ga0168718_1012911 | F099451 | KVIENLSDDYEIEMRIRRKLTDEDIIELHKKYGKIYPYPYETSYSELEFDDVGVSDKVLCLGVELKDE |
| Ga0168718_101302 | Ga0168718_10130212 | F067720 | MASTTYEHCGNVTAMYTAQEQFRDITKMVCARFRDLTKTYYFAVIGNMMRNAGQLPQPFWLGAACGGGSCSAAPCAART |
| Ga0168718_101403 | Ga0168718_10140313 | F087335 | MIELYFNDANLLPENREEEQYAEAALNNILAGKTADTEMCIMPCFYDAPLRKGLLYHLDDGTMLRIRPILNEAGEPELLIRCFTEETVEEMMEGVKP |
| Ga0168718_101602 | Ga0168718_10160211 | F013656 | MGKIYKEPNKSETETTINVLYSENMLSIYTNKVNLQKQLNKLLGAPTKEDKIKRSIAGSRWNISLDDKTKIQKIILKANIYEL |
| Ga0168718_101607 | Ga0168718_1016074 | F099451 | MRIDKIKTVGQLRKVIENLSDDYEIEMRIRRKLTDEDIIKLHKKYGKIYPYPYETSYSELEFDDVGVSDKVLCLGVELKDK |
| Ga0168718_102062 | Ga0168718_1020628 | F026489 | VVAEGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF |
| Ga0168718_102129 | Ga0168718_1021291 | F089053 | CSSFGVRIGRVVDGCRPAKGCITKRLYVFANGQLKLSTAEEVNVKNMEVFL |
| Ga0168718_102270 | Ga0168718_1022705 | F013656 | XXXKKIYKEPNKSETETTINVLYSENILSICTNKVDLQKKLNKLLGEPAKEHKIKRSIAGSTWNISLDDKIKIQKIILKANIYDI |
| Ga0168718_102784 | Ga0168718_1027843 | F097493 | MYKFYSKNGQAQFYEHGVEIDGTVYGIHTDRDILRIKRSVVNSKFAESEEDFDMNVEIAKIQHTDVTFEQPTAEQLSQIQSKTFDSMSDMKQYVQSVMNGDETMSQDEINAMLLLKIAEMEVAITNEQTTN |
| Ga0168718_103325 | Ga0168718_1033256 | F013656 | MEKIYKEPNKSETETTINVLYSENMLSIYTNKVNLQKKLNKLLGAPTKENKIKRSIAGSTWNIALDDKTKIQKIILKANIYEL |
| Ga0168718_104305 | Ga0168718_1043053 | F047125 | MDVVLLLMVLGVMLSGFWAADALDYIRKEIIRQEGKRRGWWS |
| Ga0168718_105618 | Ga0168718_1056182 | F047755 | MEEDKVKNVINIIKDMNIKDKLRLAICMTQSKLSGLIYNTKENYEKFDAMLKEVDEEYRTTLINFGQSKYFNINFAMAKLMEMETT |
| Ga0168718_105942 | Ga0168718_1059423 | F078693 | MVLALVRGAERSFIQADCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGVVEAQKC |
| Ga0168718_112923 | Ga0168718_1129232 | F088920 | VSARPHYYLAFGAGLILHLILHFSQKVAIFAPKRAFSLLFVPTLFFAGLSVLSPQTSPKISGQASLHQPWLSPYCLFKD |
| Ga0168718_120466 | Ga0168718_1204662 | F090515 | LGKQRHDPGIRGACQEGVTTCCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVPAFTALLCRHIGSIRTFLKS |
| Ga0168718_121366 | Ga0168718_1213662 | F097493 | MYKFYMKNGTAYFYERGIEIDGIVYGIRADRDILRIKRRIVNDKFAETDGDFDMDTEIAKIQHTDVTLEQPTSEQLSQIQSKTFDSMSELKQHVQSVMNGDETMSQDEINAMLMLQIAELKAGVDSE |
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