3300029342: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 025_10_27_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029342
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0282887 | Ga0243726
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 025_10_27_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 264744967
• Sequencing Scaffolds: 11
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F032286	Metagenome / Metatranscriptome	180	Y
F039198	Metagenome	164	Y
F042910	Metagenome	157	N
F044555	Metagenome / Metatranscriptome	154	N
F056309	Metagenome	137	N
F059106	Metagenome	134	N
F062845	Metagenome	130	N
F067720	Metagenome	125	Y
F078004	Metagenome	117	N
F081453	Metagenome	114	N
F101193	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243726_1000182	Not Available	83808
Ga0243726_1003192	All Organisms → cellular organisms → Bacteria	10986
Ga0243726_1012055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3394
Ga0243726_1013957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2986
Ga0243726_1025598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1706
Ga0243726_1028667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1534
Ga0243726_1042021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	1060
Ga0243726_1053200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	844
Ga0243726_1062187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	727
Ga0243726_1078743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	578
Ga0243726_1086471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	525

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243726_1000182	Ga0243726_10001821	F044555	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILEFISGLDYMGNLPTVPDLEKPIEIQVSTIRRIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0243726_1003192	Ga0243726_10031922	F067720	MASTTYRHPGDVTGMFATQEQFRNITKMVCARLRGFTKTYQFAVLGNMVRNAGQLPQPFWLGAACGGGSCSAARCAART
Ga0243726_1012055	Ga0243726_10120555	F032286	MVKWVCQIVTPVRHRALIFDARLFAGNAADDALVTYGTFRFCRLMCLCVKRRNIKPDSKRRSLPDSALFHADNRTEQKTISPFSLALIFTFDFAALSERRSCPEDRFRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQDRRKAGI
Ga0243726_1013957	Ga0243726_10139575	F059106	LLQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVLV
Ga0243726_1021365	Ga0243726_10213651	F078004	FYVPAVSRRIRSLALLSAVSEHLSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQGITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF
Ga0243726_1025598	Ga0243726_10255982	F101193	MARKCTEYHYFKHTYWDAMARYNWTRCPHCGKLCKPSRFKAATVLVPIELVIFVVCIFFRNSMNDAIGWFAAWLLFVLLLFLPQYIYVRFFMPYETLSEDETRKFRDLQEH
Ga0243726_1028667	Ga0243726_10286671	F056309	RRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD
Ga0243726_1042021	Ga0243726_10420212	F081453	MSPFFLLAGENIIEKHISANPVYVTNIKAPELAVKGAPGRKCVQ
Ga0243726_1053200	Ga0243726_10532001	F026489	VVAEGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKRRATPEKTEDSRLFGVKIF
Ga0243726_1062187	Ga0243726_10621871	F039198	MKLTIAEIQGTKYVQIYLTEEELQKKETKDLVKKYRQEKYSVAIFVSGKENYPEILEKIITKQVELNKNVC
Ga0243726_1078743	Ga0243726_10787431	F042910	ELAPTVRTVTASRIGGGLHLLRRQREQLSLRVRFLIEEYDIATRHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDAAITTLTISAEGKISFQGLTLAPGAAVRIHHDAGVFAAEMVSDDSTVSI
Ga0243726_1086471	Ga0243726_10864712	F062845	TEKGDSMKKTPFILHEKFRSDNNEQRKEDFQKEFERYIIDGLLNAVPSRACT