3300029316: Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 006_6_2_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029316
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133095 | Gp0281884 | Ga0242768
• Sample Name: Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 006_6_2_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 194053279
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → Clostridium sp. CAG:43	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059106	Metagenome	134	N
F062845	Metagenome	130	N
F067720	Metagenome	125	Y
F078693	Metagenome	116	N
F081453	Metagenome	114	N
F090515	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0242768_100142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques	107144
Ga0242768_100175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	98818
Ga0242768_100410	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	59615
Ga0242768_101176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	27790
Ga0242768_101333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	24758
Ga0242768_102289	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	14194
Ga0242768_104384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	6522
Ga0242768_138037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → Clostridium sp. CAG:43	652

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0242768_100142	Ga0242768_100142101	F059106	MHASVWKIRVILLQIFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV
Ga0242768_100175	Ga0242768_1001751	F081453	KEMSPFFLWIGENIVEKYISANPVCGTNIKAPELAVKGAPGRNCVQ
Ga0242768_100410	Ga0242768_100410102	F067720	MSSTAYEHFVGANKMYAIQRRFRDFTKTFCDFVKVNKIDHLGNVTVMVRNAGQLPQPFWLGSACGGGSCGAARCAARA
Ga0242768_101176	Ga0242768_10117614	F062845	VTHITTRWTEKGDSMKKTPFILHEKFRSDNNEQRKEDFQKEFERYIIDGLLNAVPSRACA
Ga0242768_101333	Ga0242768_10133324	F090515	VITCCKAGQKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVPAFTALLCRHIGSIRTFLKS
Ga0242768_102289	Ga0242768_1022892	F078693	MVLAPVRGAERSFVKADCSLLMSKENQKTTSDFDALDPRERGYSPLSDPEGEVEVEKC
Ga0242768_104384	Ga0242768_1043843	F067720	MASTTYRHIGDLTDMFAVQEQFRDITKMVCARLRGLTKTYHFAVIGNMVRNAGQLPQPFWLGVACGGGSRSAARCAART
Ga0242768_138037	Ga0242768_1380372	F059106	IRVILLQIFVWIVDLKVKERLTEHLKKDTKYRRVTIGVNA