3300029560: Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI022001-62

Overview

Basic Information

• IMG/M Taxon OID: 3300029560
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283479 | Ga0244856
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI022001-62
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 180606507
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F044554	Metagenome	154	N
F055775	Metagenome	138	N
F060985	Metagenome / Metatranscriptome	132	N
F068811	Metagenome	124	N
F081453	Metagenome	114	N
F088921	Metagenome	109	N
F099451	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244856_100019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	241368
Ga0244856_100169	Not Available	86462
Ga0244856_101411	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	19468
Ga0244856_103359	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae	9220
Ga0244856_104817	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	6543
Ga0244856_105728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	5466
Ga0244856_108657	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	3526
Ga0244856_132421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	696

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244856_100019	Ga0244856_100019158	F081453	MSPFFLLAGDNIIEKHISANPVCGTNIRAPELAVKDAP
Ga0244856_100169	Ga0244856_10016980	F060985	MRIFENYEKVKYEIIKVIDFLRHAETNLGMCRIFDNQNHELWHSVIKPWFQPERFGITHLWFSSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPTYKKYIPYRIRILKLALKDLERIKEEYGKD
Ga0244856_101411	Ga0244856_1014116	F068811	MDQDGSEHNICSTREGLCPGKEQHGAFGWKKIFQHGKEPLRNKDSVSQYCNKKVAVSLILNENVSETLCIFSIDKTNCCRI
Ga0244856_103359	Ga0244856_1033598	F055775	MAQIAQQDNLVIEVTTTAAALDSDTKKKLIECIEGGTIADVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSGEVEAIALN
Ga0244856_104817	Ga0244856_10481712	F099451	MRIDKIKTVGQLRKVIENLSDDYEIEMRIRRKLTDEDIIKLYKKYGKIYPYPYETSYSELEFDDVGVSDKVLCLGVELKDE
Ga0244856_105728	Ga0244856_1057282	F088921	LGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEVKKEKYINREIYGEKNQIIVANKSAMI
Ga0244856_108657	Ga0244856_1086575	F044554	AGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFPFSFRANFAQALFSSLLFVSDTRAKSILFLLFESEIAHLQGQYRFNSHRYCFSAFLVL
Ga0244856_132421	Ga0244856_1324212	F032286	MVKWVCQIVTPIRHRALVFNTRLFAGTAADDALVTGSTLSFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADYRTEQKTISPFSLALILTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAL