3300008482: Human stool microbial communities from NIH, USA - visit 2, subject 159490532 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008482
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053237 | Ga0115187
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 159490532 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 115628221
• Sequencing Scaffolds: 15
• Novel Protein Genes: 18
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	2
Not Available	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050794	Metagenome	145	N
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F067844	Metagenome	125	N
F076653	Metagenome	118	N
F078004	Metagenome	117	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F081453	Metagenome	114	N
F083451	Metagenome	113	N
F085718	Metagenome	111	N
F089591	Metagenome	109	N
F089592	Metagenome	109	N
F090515	Metagenome	108	N
F093883	Metagenome	106	N
F097172	Metagenome / Metatranscriptome	104	Y
F102167	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115187_100173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	70996
Ga0115187_100400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	42856
Ga0115187_102091	Not Available	9769
Ga0115187_103300	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	5571
Ga0115187_103396	Not Available	5370
Ga0115187_103475	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	5212
Ga0115187_103964	Not Available	4434
Ga0115187_105229	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	3112
Ga0115187_107252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2013
Ga0115187_108206	All Organisms → Viruses → Predicted Viral	1722
Ga0115187_108268	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1706
Ga0115187_109479	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1441
Ga0115187_110078	Not Available	1332
Ga0115187_111741	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1098
Ga0115187_120271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	608

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115187_100173	Ga0115187_10017355	F081453	MYPFFLLAGENIIGKHTLANPVCGTNIKAPELAVKGAPEKDIRIP*
Ga0115187_100400	Ga0115187_10040025	F097172	MSIIQIYLQNPKEGFIMKKNVFKKLMCAVLATACVATAVVPAMADDVVTAEAATRKVTSAYKYHIDGYDKKGYPIDGFSKTSFYKDLNSLPSVKTGKTTINVPAVTSSVKSVSKEKGEPCYESYVKFKAPKTGKYVVTLNNLQGTDDKSLKSLSCSLCEIAKTGKKYTLSGFEPDCNTVGKYDTLCENNYLARLRTILDNYKAEHPEYADVIEETYEYQKDFVNKYPVAKDKFTTKLKKGQTYVFVIDNRGMQKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYRK*
Ga0115187_100699	Ga0115187_10069911	F078004	MIRHTLVIAVINTFYRLTVDTDGMAWMRQGITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF*
Ga0115187_102091	Ga0115187_1020915	F093883	MEEDKDIKKEIRDYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFMIQLATSFGMDLDLDTTYASTAKGIIEDKTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKDMKANATGKTKADE*
Ga0115187_103300	Ga0115187_1033005	F102167	MDINQIKKYLPLGWDVVDLIDHGIIDLDIMNGKMMGEYVAVLMIKSYDKTNGHILTTFSFHDKDMDKLRMLIGNAIMAVGYRNNPLNGDGNTAIK*
Ga0115187_103396	Ga0115187_1033961	F050794	MTEFNKRLSDKIGIECTMDILLPTDDDNANIIIEYNGIIKKLMREAEKLELDTDAIKDMMRDLLNELKDDVDLNILIFDVTQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMEIKKLTLSDIKEVVTMIEDRYSYALYMTEECD*
Ga0115187_103475	Ga0115187_1034758	F083451	MDRNEREKQVLDLLMSRKDIRKLVEKSNECYSKMDFVGAMKYRQEIKDIVDRESKIMLTKSESLVSLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNFKFVKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDIFKEEAEMVNETDRSKIEEFNKKLDHD*
Ga0115187_103964	Ga0115187_1039642	F089591	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLVKYYLNRKDDETIRSIQTLLVYWESLNKGNHIDDPESTSFGLPDDYLWFSNIKGSFSYKGCKVGDFVMWEAKNENVHELLGDDSNKPSFDYRETFYTIGDGKVVVYEDGFRTDEVRMTYYRNPVRVDLTGYINAAGMQSTDIDPELPDPLVEEILDMVAKQFSLNENELNRYSMDKDNVASFK*
Ga0115187_103964	Ga0115187_1039643	F089592	MKEILKSRKVLAEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSKAYNTGFYPRSRCYNGLDKNEIDRLVKQRVDNIMKPFEEMSQMDLSQTNLEFWDDAKDKIFMGKVYNTANTVDLFYLYLAVFSGMLTPQEMDGDPVFMNSMFCFVEKDNMKDFVQQREINKMNISYKFISALKKGGDDRQAVIDLLLYIGIVTRPDFTEDEYYTGSLSNWMNEKKTNVDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDVRTSAEFLATKKDFINIKANVLDEYEEIISMSNIDNKSKTKKVKDIKKKDGVEEGDKVKEE*
Ga0115187_105229	Ga0115187_1052296	F076653	MTIRDKYFGWKDIFFDRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIDISSALQTLIRLTENAKHMFEDQPGVYDMIPYRGFFLRDDFLSGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDINSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRENKFKMTDKVKRGANNWYYSGGTISCVDSFLGKKYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYNKGFKKRLAKRFNESLRGGGDLFGANLACMVCDHKDIDWEALRLWLDKYDEPNDKGMVNSPIQFMYLYLYYYFNK*
Ga0115187_107252	Ga0115187_1072524	F067844	MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSAGAAVITPQHRSY
Ga0115187_108206	Ga0115187_1082061	F057001	MTSKDLNKVQSEVKKASEKTLTGAVKAWCQLFKSGKEVNEILKENDIKVDKDIVPALVSLAKDKEVVIQLCKDILPRINNTFCAYKEIEREYLDKLDQDKNVKMTVDKIESIAILGTTHKRFGYNEPVEYDGGVYYDVFNGSDKRIVKCAVPIKRYTYNLIAKCITYYLTHPKNER*
Ga0115187_108268	Ga0115187_1082681	F078005	LIQKQNVYFCRHIKIAYMKKSEFVKKLEKIIDMVKTEDDGFEYGGKVIFYKEDDSNYEVSVMNIEMNLEVEANVMAGMDDMDFTCLMSEVYKQKAAKAIMMEKDDDEDN*
Ga0115187_109479	Ga0115187_1094792	F085718	MVIEFDFEIYKNGDYDKVYLRNGKEARVLCDNGKGNSPMVVMIEDDKADDYIILRYNETGRRNINGQSGLDLMLSVKEREPELWVVVISYMDNKDKRQKMALPNFFSRNIRGNIYLQGSSKSSVSYYVDKLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDETAV*
Ga0115187_109479	Ga0115187_1094794	F078006	RVFAWQDDTYNRGWSKGDYIMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSRGSGSGCGIKEEATFDLATALDVMNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI*
Ga0115187_110078	Ga0115187_1100781	F058555	MGTKISLLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVTAYLSIINVQKHVFLRNRMREGYRDRIEINTDDFIDILSDGIAYFCFRHVIENCHEDIDYQLKTLKAYAEGEIRIALPDIMIYSYKAKKNEDTKDIFVGKKTSVYKCLNKNLSSDERRNMANKSRKLDRVKILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKKLIGIGMREISQSTIYRYISMFLDMCKKSISDLYDEVKKNNGVVNTKDRKNVTIGCLRLLYKGKYMHILISTEYIRDVFLGEKSSEMSKAG*
Ga0115187_111741	Ga0115187_1117412	F080673	MDEIIKLQDEILSYLRNNITKDEAYYILTTDKDMIEVLISDKKDGSKRIKILDMEYTIEKDDMLLLFDTDGVIDECLLVASYIGVNMYFRRQDVNAILYNINREKVMKYPYIAIQLDNIQTIEKRRVVFEITGHRMDDNKERIDFMFIF*
Ga0115187_120271	Ga0115187_1202711	F090515	QESVITCCKAGQKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVPAFTALLCRHIGSIRTFLKS*