Sample 3300029332

Overview

Basic Information
IMG/M Taxon OID	3300029332 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133117 \| Gp0282943 \| Ga0243782
Sample Name	Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 042_10_27_stool_1
Sequencing Status	Permanent Draft
Sequencing Center	Institute for Genome Sciences, University of Maryland School of Medicine
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	197056760
Sequencing Scaffolds	10
Novel Protein Genes	13
Associated Families	12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces tendae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	USA: Baltimore
Coordinates	Lat. (^o)	39.28846264	Long. (^o)	-76.62594594	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F055715	Metagenome	138	N
F056309	Metagenome	137	N
F059106	Metagenome	134	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F070093	Metagenome	123	N
F081453	Metagenome	114	N
F094005	Metagenome / Metatranscriptome	106	N
F097172	Metagenome / Metatranscriptome	104	Y
F101357	Metagenome / Metatranscriptome	102	N

Family

Category

Number of Sequences

3D Structure?

F032312

Metagenome / Metatranscriptome

180

F044555

Metagenome / Metatranscriptome

154

F055715

Metagenome

138

F056309

Metagenome

137

F059106

Metagenome

134

F060985

Metagenome / Metatranscriptome

132

F064817

Metagenome

128

F070093

Metagenome

123

F081453

Metagenome

114

F094005

Metagenome / Metatranscriptome

106

F097172

Metagenome / Metatranscriptome

104

F101357

Metagenome / Metatranscriptome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0243782_100547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	48372	Open in IMG/M
Ga0243782_100571	Not Available	46851	Open in IMG/M
Ga0243782_101439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	22547	Open in IMG/M
Ga0243782_101565	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	20947	Open in IMG/M
Ga0243782_101797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	18423	Open in IMG/M
Ga0243782_102626	All Organisms → cellular organisms → Bacteria	12606	Open in IMG/M
Ga0243782_102726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	12115	Open in IMG/M
Ga0243782_110110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	2879	Open in IMG/M
Ga0243782_110745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	2692	Open in IMG/M
Ga0243782_111093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces tendae	2598	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0243782_100547

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

48372

Open in IMG/M

Ga0243782_100571

Not Available

46851

Open in IMG/M

Ga0243782_101439

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis

22547

Open in IMG/M

Ga0243782_101565

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena

20947

Open in IMG/M

Ga0243782_101797

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae

18423

Open in IMG/M

Ga0243782_102626

All Organisms → cellular organisms → Bacteria

12606

Open in IMG/M

Ga0243782_102726

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae

12115

Open in IMG/M

Ga0243782_110110

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena

2879

Open in IMG/M

Ga0243782_110745

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena

2692

Open in IMG/M

Ga0243782_111093

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces tendae

2598

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0243782_100547	Ga0243782_1005472	F055715	LTKANEFDKINELLIERTAKKLKKLQKINQKKFLTNEKLCGKINELIRVGAAKILDN
Ga0243782_100571	Ga0243782_10057144	F094005	MKKETIKLKEGDQVIYQDKTLMEKANVVSIDKKNGTAILSNMVIITRTTNLEGQFTRLDGKGNAIILPCTPENEQKYNSFVAYHHSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE
Ga0243782_100571	Ga0243782_10057145	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMILLWPIVFIYALHDGIEGYPFKKYAIPYTFILVVWFIVFLYGLVS
Ga0243782_100571	Ga0243782_10057146	F060985	MSNIDEKVKNNFTIEMRIFENYEKVKYEIIKVIDFLRHAETNMGMCRIFDNQNHEFWHSVIKPWFQPERFGITHLWFSSGFSHIGYGEYHIIRGNRWLKTPIDRIDREYYIFGYWFPIYKKYIPYRIRILKLALKDLERIKKEYSDKV
Ga0243782_101439	Ga0243782_10143913	F097172	MKKNVLKKLMCVVLAAACVATAVVPAMADDVVTAEAATKKVTSAYKYHIDGYDKKGYPASYSKTSFYKDLNSLPAVKIGRTTINVPAVTSNVKSVSKEKGEPRYESFVKFKAPKTGKYVFTLNNLQGTDDKSLKCFSGGIYKPIKEGKKYTLEDLYPDEVGDYTTLYENNYLAGLRTILDNYKAEHPEYADVIEYDYNDYTSYVNSRSLDKIKFTTKLKKGQTYVYVIDNALGRTTCKPYFTTHGSDEQSCLYNTNYLKAYSFDMNIEYRK
Ga0243782_101565	Ga0243782_1015651	F056309	RTPSLSVVPLLLGGSDSLSVSYGMEPEQEALSIVSFKD
Ga0243782_101797	Ga0243782_1017972	F081453	MSPFFLLAGENIIEKHISANPVCGTNIKAPELAVKG
Ga0243782_102626	Ga0243782_10262611	F064817	MNIKNLFNRFRKWEPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNPDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
Ga0243782_102626	Ga0243782_1026266	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLRANQYKLYPLLLDILEISLKDDFYNYSNTSNIHYEGGKFPSMLTIQLFNLEF
Ga0243782_102726	Ga0243782_1027261	F059106	LQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVFV
Ga0243782_110110	Ga0243782_1101101	F056309	VRSTVKGTKRTCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD
Ga0243782_110745	Ga0243782_1107454	F070093	VSNFESLLLAEFYPFRIDPPMEPEQERLFKLYSGSGIHSLPELNPNLLQNIHRM
Ga0243782_111093	Ga0243782_1110931	F044555	QNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNLPIVPDLEKSIEIQVSTTRQIPLEQNKEVQTKIKKIIYNNLYDTLIEELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR

Scaffold ID

Protein ID

Family

Sequence

Ga0243782_100547

Ga0243782_1005472

F055715

LTKANEFDKINELLIERTAKKLKKLQKINQKKFLTNEKLCGKINELIRVGAAKILDN

Ga0243782_100571

Ga0243782_10057144

F094005

MKKETIKLKEGDQVIYQDKTLMEKANVVSIDKKNGTAILSNMVIITRTTNLEGQFTRLDGKGNAIILPCTPENEQKYNSFVAYHHSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE

Ga0243782_100571

Ga0243782_10057145

F032312

MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMILLWPIVFIYALHDGIEGYPFKKYAIPYTFILVVWFIVFLYGLVS

Ga0243782_100571

Ga0243782_10057146

F060985

MSNIDEKVKNNFTIEMRIFENYEKVKYEIIKVIDFLRHAETNMGMCRIFDNQNHEFWHSVIKPWFQPERFGITHLWFSSGFSHIGYGEYHIIRGNRWLKTPIDRIDREYYIFGYWFPIYKKYIPYRIRILKLALKDLERIKKEYSDKV

Ga0243782_101439

Ga0243782_10143913

F097172

MKKNVLKKLMCVVLAAACVATAVVPAMADDVVTAEAATKKVTSAYKYHIDGYDKKGYPASYSKTSFYKDLNSLPAVKIGRTTINVPAVTSNVKSVSKEKGEPRYESFVKFKAPKTGKYVFTLNNLQGTDDKSLKCFSGGIYKPIKEGKKYTLEDLYPDEVGDYTTLYENNYLAGLRTILDNYKAEHPEYADVIEYDYNDYTSYVNSRSLDKIKFTTKLKKGQTYVYVIDNALGRTTCKPYFTTHGSDEQSCLYNTNYLKAYSFDMNIEYRK

Ga0243782_101565

Ga0243782_1015651

F056309

RTPSLSVVPLLLGGSDSLSVSYGMEPEQEALSIVSFKD

Ga0243782_101797

Ga0243782_1017972

F081453

MSPFFLLAGENIIEKHISANPVCGTNIKAPELAVKG

Ga0243782_102626

Ga0243782_10262611

F064817

MNIKNLFNRFRKWEPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNPDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI

Ga0243782_102626

Ga0243782_1026266

F101357

MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLRANQYKLYPLLLDILEISLKDDFYNYSNTSNIHYEGGKFPSMLTIQLFNLEF

Ga0243782_102726

Ga0243782_1027261

F059106

LQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVFV

Ga0243782_110110

Ga0243782_1101101

F056309

VRSTVKGTKRTCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD

Ga0243782_110745

Ga0243782_1107454

F070093

VSNFESLLLAEFYPFRIDPPMEPEQERLFKLYSGSGIHSLPELNPNLLQNIHRM

Ga0243782_111093

Ga0243782_1110931

F044555

QNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNLPIVPDLEKSIEIQVSTTRQIPLEQNKEVQTKIKKIIYNNLYDTLIEELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029332: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 042_10_27_stool_1

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences