7000000145: Human stool microbial communities from NIH, USA - visit 2, subject 763536994

Overview

Basic Information

• IMG/M Taxon OID: 7000000145
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052641 | Ga0030534
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 763536994
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 172754645
• Sequencing Scaffolds: 11
• Novel Protein Genes: 14
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	1
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F050794	Metagenome	145	N
F051936	Metagenome	143	N
F078006	Metagenome	117	N
F081453	Metagenome	114	N
F085718	Metagenome	111	N
F088914	Metagenome	109	N
F089591	Metagenome	109	N
F089592	Metagenome	109	N
F092228	Metagenome	107	N
F099451	Metagenome	103	N
F102167	Metagenome	102	N
F106193	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2741335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	630
C2785096	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	880
C2789351	Not Available	918
SRS050422_LANL_scaffold_24882	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	12786
SRS050422_LANL_scaffold_85761	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2034
SRS050422_LANL_scaffold_85963	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	7167
SRS050422_LANL_scaffold_86722	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2268
SRS050422_LANL_scaffold_88552	All Organisms → cellular organisms → Bacteria	2153
SRS050422_LANL_scaffold_89785	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	7116
SRS050422_LANL_scaffold_90578	Not Available	3195
SRS050422_LANL_scaffold_93961	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	41542

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2741335	C2741335__gene_250340	F088914	FVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGEFIVFSAWYAAKALEMDVK
C2785096	C2785096__gene_262625	F099451	MGSNKIKTIGHLRKIIEDLSDDYVIDIRIRRKLSDNEIKELKVYPYPYETQHSELEFDDIGVSDKVLCLGVELEKE
C2789351	C2789351__gene_263751	F050794	MAPVGALYIMQLDSFLHWKIMQDLRIQRVKVLMMLYTSHYFVNNRQRQLLDHTYALSRSQAFDYMTEFNERLSDKIGIECTMDILLPTDDDNANIIIEYNGIIKKLMREAEKLELDTDAIKDMMRDLLNELKDDVDLNILIFDVTQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMEIKKLTLSDIKKVVMMMEDRYSYISSI
SRS050422_LANL_scaffold_24882	SRS050422_LANL_scaffold_24882__gene_34939	F051936	AFGFSVLQEHAVMTPVISIFFATLIIKYLSIHLSIKK
SRS050422_LANL_scaffold_85761	SRS050422_LANL_scaffold_85761__gene_150468	F102167	MDINQIKKYLPAGWDVVDLIDHGIIDLDIMNEKMMGEYVAVLMIKSYDKITESHNLTTFSFHDKDISGLRRLVSNAIMAVGLRNNPLTGDGNTAIK
SRS050422_LANL_scaffold_85963	SRS050422_LANL_scaffold_85963__gene_150956	F042095	YTDDYNYVPDPVVNNPFNTFVEFRSRKPGIANVDWGDGIKEQFPMTKVQGEDNYRIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIEICKMTAFPIVDIPGLEFLVVSHTMYVNDGIPVDKLSRSNKLIYIELSNVGQRMTEMPEAITSKTEVYYLSMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLNITQGPSDMWNYFDINTLPFFEVDKINPNITDFIFLDDWKNGERRTGWNDDNMSGRGLEHLTSFIATNSNSLRMDKLPDYIYEMRAITRFNVNTSTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAISPTENQRPSGTEQAPEGFVKGQSNGSPATPMEKIYVLKNNYAQRWTIKPA
SRS050422_LANL_scaffold_85963	SRS050422_LANL_scaffold_85963__gene_150963	F106193	LNFKDIIMGCNTCKEKALKAERERIERSMMNRPSSTVVSDREYASRSTAGCMVMLDPLKTMERDVVSIYKQTRTIGDVGIVYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRAIYIKP
SRS050422_LANL_scaffold_86722	SRS050422_LANL_scaffold_86722__gene_152753	F078006	MEDNILKRAAAELKEAGCRAFAWQDDTYNRGWSKGDYIMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSRGSGSGCGIKEEATFDLATALDVMNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI
SRS050422_LANL_scaffold_86722	SRS050422_LANL_scaffold_86722__gene_152754	F085718	MVIEFDFEIYKNGDYDKVYLRNGKEARVLCDNGKGNSPMVVMIEDDKADDYIILRYNETGRRNINGQSGLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSRNIRGNIYLQGSSKSSVSYYVDKLEEDGCFDELCEKIRVK
SRS050422_LANL_scaffold_88552	SRS050422_LANL_scaffold_88552__gene_157629	F081453	KEMSPFFLLAGDNIIEKHISANPVCRTNIRAPELAVKGALGRKCVQ
SRS050422_LANL_scaffold_89785	SRS050422_LANL_scaffold_89785__gene_161092	F099451	MEIKNVGQLRKIIENLSDDYEVEMRVRRKLSEEELKQCRYPYPYDTEYLTLEFDDIGVSDKVLCLGVTSKIN
SRS050422_LANL_scaffold_90578	SRS050422_LANL_scaffold_90578__gene_163387	F089591	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLIRYYLNRKDDETIRSIQTLLVYWESLNKGNHIDDPESTSFGLPDDYLWFSNIKGSFSYNGCEVGDFVMWEAKNENVHELLGDDNNRPSFDYRETFYTIGDGKVVVYEDGFRTDEVRMTYYRNPVRVDLTGYINAAGMQSTDIDPELPDPLVEEILDMVAKQFSLNENELNRYSMDKDNVASFK
SRS050422_LANL_scaffold_90578	SRS050422_LANL_scaffold_90578__gene_163388	F089592	MSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSKAYNTGFYPRSRCYNGLDKNEIDRLVKQRVDNIMKPFEEMSQMDLSQTNLEFWDDAKDKIFMGKVYNTANTVDLFYLYLAVFSGMLTPQEMDGDPVFMNSMFCFVEKDNMKDFVQQREINKMNISYKFISALKKGGDDRQAVIDLLLYIGIVTRPDFTEDEYYTGSLSNWMNEKKTNVDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGHDVRTSAEFLATKKDFINIKANVLDEYEEIISMSNIDDKSKTKKVKDIKKKDDVEEGDKVKEE
SRS050422_LANL_scaffold_93961	SRS050422_LANL_scaffold_93961__gene_174946	F092228	MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCQDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIILKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGVANSWVKGYLIDQLAIS