3300014563: Human fecal microbial communities from obese patients in Germany - AS45_24

Overview

Basic Information

• IMG/M Taxon OID: 3300014563
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151590 | Ga0134418
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS45_24
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 104934089
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Herelleviridae → unclassified Herelleviridae → Herelleviridae sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042737	Metagenome / Metatranscriptome	157	Y
F068811	Metagenome	124	N
F078004	Metagenome	117	N
F081453	Metagenome	114	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134418_1000939	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Herelleviridae → unclassified Herelleviridae → Herelleviridae sp.	12617
Ga0134418_1020312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	836
Ga0134418_1036912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	512

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134418_1000939	Ga0134418_100093912	F042737	MQLTAKSNEVFEYLKNNGGKVSIEELANATGRSARSVGANVLDLTNKGLVVREKEEVEGAEKPVAYAILTDAGKTFVPSDDAE*
Ga0134418_1000983	Ga0134418_10009836	F078004	LSSRNTDLLFRDLLFRKSSTGGLSAVAGSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQGITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTILIIGTIFHNTF*
Ga0134418_1020312	Ga0134418_10203121	F068811	MDQDGSEHNICSNREGLCPGKEQHGASGWKKIFRHGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRI*
Ga0134418_1036912	Ga0134418_10369122	F081453	MSPFFLWIGENIVEKYISANPVCGTNIKAPEPAVKGTPGRKFM*