3300029129: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019855-113

Overview

Basic Information

• IMG/M Taxon OID: 3300029129
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0193062 | Ga0168797
• Sample Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019855-113
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 145927887
• Sequencing Scaffolds: 11
• Novel Protein Genes: 23
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
Not Available	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F032286	Metagenome / Metatranscriptome	180	Y
F042095	Metagenome	159	N
F050794	Metagenome	145	N
F055715	Metagenome	138	N
F058555	Metagenome	135	N
F062845	Metagenome	130	N
F064725	Metagenome	128	N
F067845	Metagenome	125	N
F071325	Metagenome	122	N
F074899	Metagenome / Metatranscriptome	119	N
F076653	Metagenome	118	N
F077313	Metagenome	117	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F078822	Metagenome	116	N
F081453	Metagenome	114	N
F083451	Metagenome	113	N
F083452	Metagenome	113	N
F089592	Metagenome	109	N
F093883	Metagenome	106	N
F097493	Metagenome	104	Y
F098313	Metagenome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0168797_100077	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	156603
Ga0168797_100154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	107836
Ga0168797_100525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	41636
Ga0168797_100552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	39824
Ga0168797_100600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	37181
Ga0168797_100613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	36728
Ga0168797_101253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	18409
Ga0168797_101384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	16358
Ga0168797_103400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5782
Ga0168797_104882	Not Available	3696
Ga0168797_115793	All Organisms → cellular organisms → Bacteria	1129

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0168797_100077	Ga0168797_100077110	F078005	MKKGKFVKELERIIDMVKAEDDGFEYGGKVVFYKEDDDSYEIWAKSIEMAMKVEANAIASLDDKTFACLMGEVYEQKFTKAIMMSEDEDDEDN
Ga0168797_100077	Ga0168797_100077129	F083451	MIMDKNEREKQVLDLLMSRKDIRKLVEKSNECYSKMDFVGAMKCRQEIKDIVDRESKIMLTKSESLVSLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMAECKKEIDYLMKGTSKSFQISFAVRSDEMREMIENMVGDNIREGYDVFSKEAEMVNETDRDKIEEFNKSLAHE
Ga0168797_100077	Ga0168797_100077138	F076653	MTLSDKYFGWKDIFFDRFVYCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYRCEYAPIDISSALQTLIRLTENAKHMFEDQPGVYDMIPYRGFFLRDDFSSGKNYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDSFLGKKYRKNLRTFIYRGIVFFLDRIWHTPLFERMGVKMKYNAYYCYAATSGIWYDNGFKRRLAKRFNRSLSGGGELFGANLACMVCDRKDIDWEALRLWLEKYDDPTDNGMVNSPIQFMYLYLYYTFNK
Ga0168797_100077	Ga0168797_100077167	F098313	VNLINKINNFSNVREKKFDFVIYPLDLIITVGLDYKTLCDRFENMEPEHEGKWGDEDDMDKEASFVNLVRDRDDDDKFAILWNFSSDDDLIMRNICHESFHIAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGDCVSEFINSKNTD
Ga0168797_100077	Ga0168797_10007717	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVDNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGKDNYRIIFRSLAIQHKKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQICKMTAFPIVDIPGLEFLVVSHTMYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLETLNLSSCYLDRYIKEFNDLPKLKTLNITPGPSDMWNYFDINTLPFFEVDKINPNITDFDFLNDWVSGERGTGWNDDNMSGRGLEHLTSFIAANSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNVIYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE
Ga0168797_100077	Ga0168797_100077184	F050794	MQDLRIQRVKVLMMLYTSNYFVKVRQKQLLDHTYALSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEHNGIIKKLMKEADKLELDTDAIKVMMRDLLDELKDDIDLNILIFDVTQLLIKYNLFRLDAITEQEFKNSFVRMDSRNMEIEKLTLSDIKKVVEMIEDRYSYALYMTEEYG
Ga0168797_100077	Ga0168797_100077187	F077313	MSKYVIKRKIPKYQEAGEVTPIMPGNVVGLQGIGVEPLVSSTQIGFDIQQPDINTIDTSDLSALVDSNKKVDKSGSTDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVTQPGEAPMEAMGQKHADGGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLKKNDKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIADAKKELLKKVAGIRHKMEKGGSSLFDYLLTFRPVENKYNNKDNTFGYQRQGQDGSYGGINTDERLEYYKTFMPLAYDAYMSAPKATAAKALQDAIYSTTGGWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKFGQYSSSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEEPDVKLDMPELIDPNTLPKTNTNAGKLNSGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAILSSNIGKYINEVEQGNVAQRTWADNVNAQSWANTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
Ga0168797_100077	Ga0168797_100077195	F064725	VIQLAREGRLDFFCITDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITERIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYGRMWPNAFDKYIKLI
Ga0168797_100077	Ga0168797_10007726	F089592	MKEILKSKKVLVEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSKAYNTGFYPRSRCYNGMDKDEVDRLVNQRVNNIMKPFEDISQKDLSQTNLEFWDDAKDKIFMGKVYNTANTVELFYLYLAVFSGMLTPQEMDGDPIFMNSMFCFIEKDNAKDFVQQREINKMNISYKFINALKKGDKERQAVIDLLLYIGIVTRPDFTEDDYYTGSLSNWMNEKKTNIDYLLDIWDRSLEGDFKEVLEFYRIINVLQRNGRINMTPSGLQYNGQIIGPDTRTSAEFLATKKDLISVKANVLDEYEELMSISNIDDKTRTKKVKDVKKKEDVDEGDKVNTEE
Ga0168797_100077	Ga0168797_10007733	F093883	MEEDKDIKKEIRDYLKEEADTHIRHWMAIKRESKRLYSEIEDRTKKIALKSSSLIKEEDFVSLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDFDTTYASTAKSIMEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKDIIKNNINSI
Ga0168797_100077	Ga0168797_10007738	F058555	METKVALLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVTAYLSIINVQKHVFLRNRMRDGYRDRIEINTDDFIDILSDGIAYFCYRHVIEDCHEDIDYQLKTLKAYAEGEIRIALSDIMIYSYKAKKNEDTKEIFVGKKRSVYKCLDKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTIKFNVAYLLNELNKKLAGIGMHEISQSTIYRYISMFLGMCKKSISDLYDEVKKNNGIANAKDRKNVTIGHLRLSYRGKIMHIIIAEDFIKDVFLGVKGLEMSKAG
Ga0168797_100077	Ga0168797_10007756	F083452	MSGRVKIKIKDKKPKIDVFKVIESRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIERYIKR
Ga0168797_100077	Ga0168797_10007774	F078006	MLNQALAGRKEYHDRTCADMVRGRFPAPWHNLNINDMGDNILRKAADELKKAGCRVFAWQDDTYNRSWSKGDYTMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSCGSGSGCCVKEEATFDLEAALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI
Ga0168797_100154	Ga0168797_10015433	F062845	MKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNGVPSRACA
Ga0168797_100525	Ga0168797_10052523	F026489	LTPKENQKSASDFDALEPRKRXXXXXXXXXXXXXXXTPEKTEDSRLFGVKIF
Ga0168797_100552	Ga0168797_10055222	F097493	MYKFYSKNGQAQFYEHGVEIDGTVYGIHADRDILRIKRRIVNDKFAETDGDFDMDTEIAKIKHTDITFEQPTAEQLSQIQSKTFDSMSDMKQYVQSVMNGDETMSQDEINAMLMLQIAELKEGVGGE
Ga0168797_100600	Ga0168797_10060050	F032286	VTPVRHRALIFDVRLFTGNTADDALVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTGQKTFSPFSLALIFTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQDRKGQKI
Ga0168797_100613	Ga0168797_10061316	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSANTGTDAEKAAELARQLKVAYAPELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMGHTDNLNAFLYWSGCYGVPEDVTVALLLDDSAAMTAQLYAPQADSAAAELLDDAVGHNEMGAAFIDYNGTAYVVAVFR
Ga0168797_101253	Ga0168797_10125318	F078822	AFLKAFHPHAVRFPAAFLLVHRFYLVFEELLSCATAYL
Ga0168797_101384	Ga0168797_1013843	F074899	MSGRKQWSKQAATSSFLDKKTPQSLIQQGLEGSTTLGKDEVGSSNLPSSSKMC
Ga0168797_103400	Ga0168797_1034007	F081453	MFPFFLLAGENIIEKHISANPVCGTNIKAPESAVKGAPGRKFV
Ga0168797_104882	Ga0168797_1048821	F071325	LLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0168797_115793	Ga0168797_1157932	F055715	LTKANEFDKINELLIERTAKKFERTSKNKLKKFLTNEKLCDKINELIRVGTAEILDN