3300007098: Human stool microbial communities from NIH, USA - visit 1, subject 765135172

Overview

Basic Information

• IMG/M Taxon OID: 3300007098
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052576 | Ga0102540
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 765135172
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 113398014
• Sequencing Scaffolds: 17
• Novel Protein Genes: 17
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	2
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F044554	Metagenome	154	N
F051936	Metagenome	143	N
F052660	Metagenome	142	N
F055715	Metagenome	138	N
F055775	Metagenome	138	N
F068941	Metagenome	124	N
F071325	Metagenome	122	N
F074899	Metagenome / Metatranscriptome	119	N
F076189	Metagenome	118	N
F081453	Metagenome	114	N
F088921	Metagenome	109	N
F089005	Metagenome	109	N
F099451	Metagenome	103	N
F101355	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102540_100080	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	103773
Ga0102540_100292	All Organisms → cellular organisms → Bacteria	45828
Ga0102540_100480	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	30265
Ga0102540_101060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	14344
Ga0102540_101262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	11917
Ga0102540_101355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	11187
Ga0102540_101873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	7922
Ga0102540_102100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	6907
Ga0102540_102338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6156
Ga0102540_104030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	3538
Ga0102540_104335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	3289
Ga0102540_105237	Not Available	2721
Ga0102540_105554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	2584
Ga0102540_105942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	2428
Ga0102540_106067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2388
Ga0102540_113937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1120
Ga0102540_121216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	778

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102540_100080	Ga0102540_10008047	F099451	MEIKNVGQLRKIIENLPDDFEIEMRVRRKLTDEELKNCRYPYPYDTEYLILEFEDIGVSNKVLCLGVTSKND*
Ga0102540_100292	Ga0102540_10029253	F055775	MAQIAQQDNLVIEVTTTAAALDSNTKNKLIACIEGGTIADVVLVTKEVEKKISHARVVSWLVDTTGDSPKYTIHIINANSGAVAAIALN*
Ga0102540_100480	Ga0102540_10048021	F051936	MKQEGTGQVLFFLLAPRGKAFGFSGLSETAVMTPVIINFSLLLIIR*
Ga0102540_101060	Ga0102540_1010602	F089005	LTKSKQRSIIALALLRLATSNEESKQALKVRRTLKIEQRDNSKETRNDFEESSKNYSEMYTKKHQE*
Ga0102540_101262	Ga0102540_1012626	F042936	VWKPKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKLYFRSRLRGKG*
Ga0102540_101355	Ga0102540_10135512	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFDSHRYCFSAFLVL*
Ga0102540_101873	Ga0102540_1018735	F052660	MCILRVLPENTPEKIGQERAGTEWTLVKSKIRLRIRNRSCGRFLHGGILMGIVLPIPSHRAKSHDFAHWWPAAAGHSRSADALPGKSNS*
Ga0102540_102100	Ga0102540_1021009	F088921	LGAKIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRDKMRSES*
Ga0102540_102338	Ga0102540_1023386	F071325	HKFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPSAFLKVFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL*
Ga0102540_104030	Ga0102540_1040303	F101355	MIEPPFQHGIADMAFWFIQWYLPSAQSPQPKGAGAVFPYVLPRCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA*
Ga0102540_104335	Ga0102540_1043355	F081453	MSPFFLLAGENIIEKHISANPVCGTNIKAPEPAVKGTPGRKFM*
Ga0102540_105237	Ga0102540_1052372	F055715	MNELLIERMAKKFERASKNKLKKFLTNEKFCDKINELIRVGTAEILDN*
Ga0102540_105554	Ga0102540_1055545	F081453	MSPFFLWIGENIVEKYISANPVCGTNIKAPELAVKGAPGRNCVQ*
Ga0102540_105942	Ga0102540_1059423	F074899	MSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVGSSNLPSSSK*
Ga0102540_106067	Ga0102540_1060672	F068941	MKNNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVKANEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPNTMQNKTLSFNLYATGKNATLNG*
Ga0102540_113937	Ga0102540_1139372	F076189	VLSAGHCFFISFPPFIKPLLYVEKLQIGTVLPVVSDLYREFAELLAYFDLHAIQSAQKPLHMLCNFHENTLGLLIFYTDYAII*
Ga0102540_121216	Ga0102540_1212162	F068941	VKIDGGTVTFNGGSNITSTIIPTASKEEGIKKDITVKASKAGVTMNLYMNLTTMPDELKEKSFEYEIYYNSSTLVKKGNFGVYNSNTNTSGIAYATSGVTTLTLFTGRDVSTNSADKYTLYLWFNGKDYTNPNTMQSKKLSFDLYATGEDAVLAGN*