3300028968: Human fecal microbial communities from infant at 12 months in Denmark - 504_12M

Overview

Basic Information

• IMG/M Taxon OID: 3300028968
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193708 | Ga0169714
• Sample Name: Human fecal microbial communities from infant at 12 months in Denmark - 504_12M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 103931822
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → Viruses → Predicted Viral	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F054110	Metagenome	140	N
F070093	Metagenome	123	N
F076189	Metagenome	118	N
F081453	Metagenome	114	N
F087334	Metagenome	110	N
F090513	Metagenome	108	N
F090515	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169714_100134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	65156
Ga0169714_100986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	16974
Ga0169714_101123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	15210
Ga0169714_101803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	9855
Ga0169714_102659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	6648
Ga0169714_108031	All Organisms → Viruses → Predicted Viral	2084
Ga0169714_115436	Not Available	1096
Ga0169714_121996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	761

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169714_100134	Ga0169714_1001346	F076189	MPGRLCYLPGIAFFFFLFPFIKPLLYVEKLQTGTVLPVVSDLYREFAEPSVHFDSHAIQSAQKQLRMLCNFHENTFWLLIFYANYAIL
Ga0169714_100986	Ga0169714_10098614	F090515	VTTCCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVPAFTALLCRHIGSIRTFLKS
Ga0169714_101123	Ga0169714_1011231	F070093	FESLLLAEFCPFRIDPPMEPEQERLFKLYSGSGIQSLPELNPNLI
Ga0169714_101803	Ga0169714_1018039	F081453	MFPFFLLAGENIIEKHISANPVCGTNIKAPEPAVKGTPGRKFM
Ga0169714_102659	Ga0169714_1026592	F042936	MGRGGGKGRVWKTKEGIMKTSGIVNRGEDTIRNFEKVEQKRALTPPYLGKVYFRLRLRGK
Ga0169714_108031	Ga0169714_1080313	F054110	VNYQPTIKKLLKALQMNGRRYVVDTRQSWSKFDKPCKVYIVSRMYTEEEYKLTFPHKYKKGKTFKEKQLYKKESEYSSTKQHEVLLFLVKTYKGGD
Ga0169714_115436	Ga0169714_1154362	F087334	MASRSPFVGAAVHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAAALFEYREKHQ
Ga0169714_121996	Ga0169714_1219963	F090513	MAKYVRKMEWKLLHIKHILYMRPFGALKIAPQSVENKNGTKAVLQGWAAAF