3300006525: Human stool microbial communities from NIH, USA - visit 2, subject 764062976

Overview

Basic Information

• IMG/M Taxon OID: 3300006525
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052543 | Ga0101027
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 764062976
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 175242551
• Sequencing Scaffolds: 17
• Novel Protein Genes: 19
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Pedobacter → Pedobacter nutrimenti	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp. AR20	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051936	Metagenome	143	N
F055775	Metagenome	138	N
F056682	Metagenome	137	Y
F067844	Metagenome	125	N
F068941	Metagenome	124	N
F073656	Metagenome	120	N
F074964	Metagenome	119	N
F076064	Metagenome	118	N
F081354	Metagenome	114	Y
F081453	Metagenome	114	N
F090484	Metagenome	108	N
F098313	Metagenome	104	N
F099269	Metagenome	103	N
F099406	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101027_100038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	152421
Ga0101027_100040	All Organisms → cellular organisms → Bacteria	149742
Ga0101027_100043	Not Available	145260
Ga0101027_100291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	56756
Ga0101027_100306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	54882
Ga0101027_100372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	48631
Ga0101027_100467	Not Available	42789
Ga0101027_101805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	14988
Ga0101027_104343	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Pedobacter → Pedobacter nutrimenti	6646
Ga0101027_106535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	4440
Ga0101027_110990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus	2659
Ga0101027_111963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	2439
Ga0101027_114142	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp. AR20	2063
Ga0101027_117146	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1679
Ga0101027_124092	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1157
Ga0101027_124178	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1153
Ga0101027_145574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	536

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101027_100038	Ga0101027_100038137	F068941	MNNKKFIIGVVLLLLLMLGGTYAYYKWSSSDNMNVNVKIDGGTVNFNGGTNITSTIIPTASKEEGIKKDITVKASRAGATMNLYMDLTTMPEELKEKSFIYELYYNDNSLVTKGNFKDINYSSNGTTTLTLFTGRDISTNTTDKYTLYLWFDGKDYDNPETMQNKTLSFDLYATGENAVLAGN*
Ga0101027_100040	Ga0101027_100040156	F068941	MIGGTYAYYRWNSTSNINVSVKISGNTVTGTLTPVDSKEEGIKKDITVIASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPNTMQNKTLSFNLYATGKNATLNG*
Ga0101027_100043	Ga0101027_10004327	F090484	MDIPKNPSDFFLLQIMKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFNELFRMTDSTFVARRYRVNGVQLTLGCGKVNLPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIKDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVGKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDSKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIVRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKTYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNINTTVDNDKELDGESVFKDIPFEELSFYNDTYLYPISQYSSL*
Ga0101027_100043	Ga0101027_10004346	F099406	MAEVGYNSKFEGLEVDSRLENVVQAAPGTSSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDYVNKKYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLESLGMVSTGVDSGYLDLSIFSGNSGSLDENSFAKVLDAYNNNITLGKLDGDYYHLNYFLEGNDFENNFKLKIVFASFANADSAVGASEYDIEIQVGTFVVIQDKTYEAMNNMVTLSNTILSYLNFMAMPPKVVTTLANLPKGAHNIIANVASATNLSMTVSSEHVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDSVVIPKNSFIELSIWYINDKLVIRVGEQA*
Ga0101027_100043	Ga0101027_10004382	F098313	MKEKEFDFVIYPLKLIITIGLDYKTLCDRFENAELDHEGEWGDEGDLDSEVSFMNLVRDKGDDRAFKLLWNFQSENDMTIQNICHESFHAAMSVCQHCNMSLGFKVGEDEHAAYIAGFVGNCAGEMFGFLEEEKDGKEE*
Ga0101027_100291	Ga0101027_1002919	F068941	MENNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVKANEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFDLYATGKNATLNG*
Ga0101027_100306	Ga0101027_10030624	F081453	MSPFFLLAGDNIIEKHISANPVYVTNIKAPELAVKGAPGRKCIQ*
Ga0101027_100372	Ga0101027_1003721	F067844	MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSVGAAVITPQHRSY
Ga0101027_100467	Ga0101027_10046741	F055775	MAQIAQQDNLVIEVATTATALDDDTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGESPKYTIDIIKADSGAVEAIELN*
Ga0101027_101805	Ga0101027_10180512	F056682	MKMQSRVGKVVNQSVGQSEMYPASFWAFPSKNRSTFPIQELRKNREDQEVL*
Ga0101027_104343	Ga0101027_1043431	F051936	LLFAPLALRGKAFGFSVLQEHTVMTPVISVFFAMLIIRYLSIHISIKK*
Ga0101027_106535	Ga0101027_1065358	F067844	MNTLAAETASAWYLILNRKRPPKRAVASYFNMTQFSSHLPRPLTMGTQQVSAGAAVITPQHRS
Ga0101027_110990	Ga0101027_1109902	F074964	MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKVVCKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFIKFSLYSKVYKDSKVDKEKGIEAKTADWCADNVVYGEEYKPFGFATAETLETKKSAKWLVKETDEYKATYVAVKIKSYSIRTIAKCVNEYLTHESNQQ*
Ga0101027_111963	Ga0101027_1119634	F056682	MKMQSRAGKVANQPIGQDKMYSASFREFPSKNHGPFSFQELGKIHENQEVL*
Ga0101027_114142	Ga0101027_1141421	F051936	VLFFPLALRGKAFGFSVLQEHAVMTPIINILFAMLIIRYLSIHISTKK*
Ga0101027_117146	Ga0101027_1171462	F073656	MTMEQDQEQMQGALYVAVDDGNKIIAMERSRRSDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFADPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH*
Ga0101027_124092	Ga0101027_1240922	F081354	LSAKKALDLVRENQQSSAHNFVKDFSSFLPESRRRSPLKKGAATENPLEYGKTEVQILFEPLPTTISSMELPKNFENKKLPNPLR*
Ga0101027_124178	Ga0101027_1241784	F076064	RFAVGTNGEEGFRHHISEELKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSARRQIRLCAPDLKRRNETRRHPMPVLKLY*
Ga0101027_145574	Ga0101027_1455741	F099269	RGDAEASFFVHGVLVSVQVGELLLLDDLGDRAGGASVLASATGDAGILVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCASV*