3300014706: Human colon tissue microbial communities from Howard University Cancer Center, USA - CC0995

Overview

Basic Information

• IMG/M Taxon OID: 3300014706
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121343 | Gp0152888 | Ga0135354
• Sample Name: Human colon tissue microbial communities from Howard University Cancer Center, USA - CC0995
• Sequencing Status: Permanent Draft
• Sequencing Center: HiThru Analytics LLC
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 56054843
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Carnobacteriaceae → Trichococcus → Trichococcus palustris	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. ATCC BAA-442	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter → Oscillibacter valericigenes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal And Colon Tissue Microbial Communities From Howard University Cancer Center, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Unclassified → Human Colon Tissue → Human Fecal And Colon Tissue Microbial Communities From Howard University Cancer Center, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: USA: Washington, D.C
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F032286	Metagenome / Metatranscriptome	180	Y
F055715	Metagenome	138	N
F068855	Metagenome	124	N
F074964	Metagenome	119	N
F078693	Metagenome	116	N
F081453	Metagenome	114	N
F090484	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0135354_102100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium	2942
Ga0135354_102124	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus	2923
Ga0135354_111495	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Carnobacteriaceae → Trichococcus → Trichococcus palustris	1046
Ga0135354_114791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. ATCC BAA-442	907
Ga0135354_115077	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	898
Ga0135354_119016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter → Oscillibacter valericigenes	786
Ga0135354_122939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	707
Ga0135354_140618	Not Available	516
Ga0135354_142741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0135354_102100	Ga0135354_1021001	F090484	MIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGKKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKNFWDGYERSTQNQIVRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYMYIKAEQFKEKIENMDISIQSLPNISITVDNDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL*
Ga0135354_102124	Ga0135354_1021245	F074964	MITKKNVNKLQNAVIKENAANLVGAVKLYNALFANGADLKSICKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVDDTFVKFALYSKVYKDTNADKEKGVEAKTADWCAENVVYGSEYKSFGFTTAESLETQKSTKWLIKENDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESNQQ*
Ga0135354_111495	Ga0135354_1114951	F055715	LTKANEFDKINELLIERTAKKFEKASKNKLKKFLTNEKFCDKINELIRVGTAEILDN*
Ga0135354_114791	Ga0135354_1147912	F032286	VTPVRHRALVFDARLSAGNTANYTLVTGNTRSFCRLMCLCVKWRNVKPDSKHRSLPDSALFRADNRTEQKTISPFSLALIFTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQDRKRAEI*
Ga0135354_115077	Ga0135354_1150773	F078693	MVLALVRGAERSFIKADCSLLMSKENQKTTSDFDALDPRERGCSPLSDPKGEVETEKS*
Ga0135354_119016	Ga0135354_1190161	F068855	VEVQGPQARKALALQGLQAEKENENANVRNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW*
Ga0135354_122939	Ga0135354_1229391	F081453	MSPFFLLAGDNIIEKHISANPVCGTNIRAPELAVK
Ga0135354_140618	Ga0135354_1406181	F026592	NSISCCLRTASPQGIAALAAQGGVATLTERSDATFSVEQFSSADRE*
Ga0135354_142741	Ga0135354_1427411	F078693	LVKWLCAPRGPERSFIKADYSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGVVETEKS