3300011989: Sheep rumen microbial communities from Wyoming, USA - O_aries_Con_7429

Overview

Basic Information

• IMG/M Taxon OID: 3300011989
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118654 | Gp0138585 | Ga0120380
• Sample Name: Sheep rumen microbial communities from Wyoming, USA - O_aries_Con_7429
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Missouri
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 249485710
• Sequencing Scaffolds: 11
• Novel Protein Genes: 21
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
Not Available	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp. BP1-145	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Ruminant Gut Microbial Communities From Various Locations In Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Ruminant Gut Microbial Communities From Various Locations In Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: USA: Wyoming
• Coordinates
  • Lat. (^o): 41.314168
  • Long. (^o): -105.584589
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F027710	Metagenome / Metatranscriptome	193	Y
F028722	Metagenome / Metatranscriptome	190	Y
F041054	Metagenome / Metatranscriptome	160	Y
F042680	Metagenome / Metatranscriptome	157	Y
F048027	Metagenome / Metatranscriptome	148	Y
F051619	Metagenome / Metatranscriptome	143	Y
F057815	Metagenome / Metatranscriptome	135	Y
F063246	Metagenome / Metatranscriptome	129	Y
F066344	Metagenome / Metatranscriptome	126	Y
F067315	Metagenome / Metatranscriptome	125	Y
F077963	Metagenome	117	N
F081453	Metagenome	114	N
F082004	Metagenome / Metatranscriptome	113	Y
F084966	Metagenome	111	Y
F088010	Metagenome / Metatranscriptome	109	Y
F097402	Metagenome / Metatranscriptome	104	N
F097585	Metagenome / Metatranscriptome	104	Y
F102225	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0120380_1000001	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	412514
Ga0120380_1000034	Not Available	134182
Ga0120380_1000085	All Organisms → cellular organisms → Bacteria	87879
Ga0120380_1000168	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	64869
Ga0120380_1002744	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	11124
Ga0120380_1003387	Not Available	9504
Ga0120380_1011094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3297
Ga0120380_1013707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2713
Ga0120380_1016302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2308
Ga0120380_1021652	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp. BP1-145	1768
Ga0120380_1055740	Not Available	756

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0120380_1000001	Ga0120380_100000110	F028722	MANTVQNGQTCLEKRGMEERHQEITRSDYNIENQYGPTHPDALSDGDAQGKGTGHGGHTHFLPDCTKPTTQINYSNFDTENGGGYYDIKGRNGISGRERALAISMYNKEVPYGANLVDTTQNVNDGQYFVGQQIGQKTTT*
Ga0120380_1000001	Ga0120380_1000001136	F051619	MDNSTVNWEEVRINASINIMNAILSSSIMVFIFQFIFKRQVADIAVEYANKLIEELKKKGE*
Ga0120380_1000001	Ga0120380_1000001208	F048027	MAKETKTKKVTIDSRVRAIAESGSGKGVGMPNWFTLPQNKEKRALHIDICKKLTELSNAHDKYPITYLVYFAVGKNAHRLCTFLGGYDKIDEKKAETIFKWLEMFAKHHKNEKLFKNPNVAHALCRFYDKYSTKTKDFKEALAKSEPNPKINVKNAKMSVETLGIAKKVEETAKTEEMAMAMAAAE*
Ga0120380_1000001	Ga0120380_1000001374	F102225	MKHIIRTIEENYHEYLWHMRCNGDVFAEYWRPFNFDEWVMNGMPIYDGGVKLDDGTEHKVTFRY*
Ga0120380_1000001	Ga0120380_1000001377	F066344	MGKFLQMMSQNDSKALVARASQINTQAKIAQETIVQKLKNDIAEVEIEIQNLTDFAPDTTQSLRPGVKGWNPTTWAASLQDAKTRLYELNIELKIAEATLKEFFGDEGAVLAPAE*
Ga0120380_1000001	Ga0120380_1000001386	F027710	MEKRKLYVLIDKSLKPVYGCVQGGHAVAQWMLEHPYSREWQNDYLIYLSADVPKWRRRLESLDVEYTEFKEPDLNFKVTALAVFGHEELFKRLKVITED*
Ga0120380_1000001	Ga0120380_100000140	F063246	MGKLKIEINDIQNIRDLLQNAYNLADEQIIQAQNEINKMANATQLQEESIDGKAKYGKIINDYLGVKDKAISKKIDIAKILTDIHNHNGDVKEALENGTQSKGMDFNFDDIKKMIDESYEDKEKTKTIQLNKK*
Ga0120380_1000001	Ga0120380_1000001412	F042680	MVVQDIKSIVKGIAQLQYIMSGGIAVYHITSTDDKKYQLEIDLSDKKDVGETAAFKPIEKAILLMRWIRKANENDTLIEIK*
Ga0120380_1000001	Ga0120380_1000001483	F082004	MILHLNLTEDHLKLVRFLNIEDNDDDVLTINKKVMLTMQTHILDDVAMILGLRDKAIKNTTEDADGSAYPDDVEKYMLDTYHYVSDNLYLIESLLHQKVFEGIKPNTEYICKDNEMIWKEKDE*
Ga0120380_1000001	Ga0120380_1000001595	F057815	MAKKIKDSDILKAMAMHLDEDSVVFGANGHYAVGAYYDITKVSSVFGDKDYNSQEAIDGADSTEAAEKYRTDNGEMNESLQKAEWLKNW*
Ga0120380_1000034	Ga0120380_1000034181	F088010	MKKDFFGKVMGVLLLAVMTLVCSCNGCKGKTPKIDDPVVVYHDYDGVVQDFTAGVGHIQALHRQTMYSLIQHLQDEGHTIALNGKYQWRNSLVILNDTVTMENIDDLHVVSIRDVFFYWDNQRGPQVQYITDHVKDGTQIPWPINDVWIEDKDMSDKPIKLSAEQALIRLKEWNGILPKDCNFIILRLPVGPKDCNPQWTFGDVDDVLFIDAVTGEIRDYDPAFK*
Ga0120380_1000034	Ga0120380_100003497	F077963	MKLLRKTLDFFNIHPDHNQRWTLTTLFLTGLLYTYVEPVITKAWISELPAEWLAFQSLTYSVVGLVIGMIWKGRLRRWAVRWFTVLCIIESAAGFLVGMWLCFVDYNVWVLAVACLLYGTLVSEFIGKCLMTFRPKLWNEKEREVYDNNNDVVCGIYCIVGYVCALVCMPSLQVAMFVFGLTCGLDNIGWLVVYHKNRDRFRELDNE*
Ga0120380_1000085	Ga0120380_100008568	F028722	MSTINENGQTCLELRGITERQNEIVRSDYNIEDQYGPTHKDALSDGDALGKGTGHGGHTAWLPDCSKPTNMIDYSNFDTFNGGGIYDIEGRNDIGGRKKAMASELYNNENQYGADLIKTAENVSQGQYFIGQTTKNL*
Ga0120380_1000168	Ga0120380_100016832	F081453	MPPFFLLIGETISKRMTPANPVYGTNIKAPEIAVKGAPGRKCV*
Ga0120380_1002744	Ga0120380_100274411	F041054	MGVRNCAELGENAQKIMRRLMANQDLLKLLYYTDKDPLSHEDLTKEQIQKEVFEKLIKITPRVGPKETANAVVAIRIVSGQANPENNQFRNVSIGIEVFTPMDQWVMKGVQLRPFAILGEIQKSLSNKTINGLGKMQGGSFTLNFLTEEMSDYEMNFDIISYD*
Ga0120380_1003387	Ga0120380_10033872	F097585	MSEIHYIEENLPHKVSEVICVGCGKRWIAVRPMSTLLKDLECPQCGKQGYVIETGEIIDNEEPF*
Ga0120380_1011094	Ga0120380_10110942	F067315	MNNLENFSNWLQIFSFLILVQDFNNTDLMKYLEHQDNLLNKIMKQNEEILQTLKGGKQWT
Ga0120380_1013707	Ga0120380_10137074	F097402	MTNLDHIQSLIRHGAQLRGEDGSLTPLTKAFYHNAVEACHTGGYNAATYNLVLPGIDSELWLAIWKDGHADSGSPKSICACLAR*
Ga0120380_1016302	Ga0120380_10163022	F013656	MTMAKIYKEANKCETETTINVLYSENILSIYTNKVDLERRLYKILGEPKKEYIKGRSVLASLWEIPLDDVSKINKVILRADIYGV*
Ga0120380_1021652	Ga0120380_10216522	F077963	MIKLFNRLLDLINIHPDKNQRWTLSTLFVVGLLDAYVGPAISKAWVTELPAEWLAFQSLVYSVVGLFIGMIWKGWVRRKAIRWFTVLCIIESAAGFCVGMWLCFVEYNVWVLAIACLLYGTLVSEFIGKCIMAFRPKLWNEKEREVYDNNNDVVCGIYCIIGYVCALLFMPSLRVAMFVWGLCCGIDNIGWLVVYHRNKDKFKED*
Ga0120380_1055740	Ga0120380_10557402	F084966	MLMLTLEDAVKVAKRLVKDGVDDEEIIRQELEQKCWIPPEKDEAAKQLNDLIFDINPAEICNQIESDNLTNWCKTMQVEMKMEMVQLPCWSRKE*