3300006312: Human stool microbial communities from NIH, USA - visit 2 of subject 159753524

Overview

Basic Information

• IMG/M Taxon OID: 3300006312
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052475 | Ga0099626
• Sample Name: Human stool microbial communities from NIH, USA - visit 2 of subject 159753524
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 115817678
• Sequencing Scaffolds: 14
• Novel Protein Genes: 14
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F042936	Metagenome	157	N
F047126	Metagenome	150	N
F071325	Metagenome	122	N
F073656	Metagenome	120	N
F078822	Metagenome	116	N
F081453	Metagenome	114	N
F087334	Metagenome	110	N
F090513	Metagenome	108	N
F090515	Metagenome	108	N
F092227	Metagenome	107	N
F097493	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0099626_100051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	162963
Ga0099626_100468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	41649
Ga0099626_100674	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	31005
Ga0099626_100844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	24466
Ga0099626_100982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	20557
Ga0099626_101388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	14116
Ga0099626_101489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	12670
Ga0099626_101613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	11364
Ga0099626_101863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	9470
Ga0099626_102097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7952
Ga0099626_102246	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	7223
Ga0099626_104137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	3217
Ga0099626_104291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3092
Ga0099626_108350	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1501

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0099626_100051	Ga0099626_10005188	F081453	MSPFFLLAGDNIIEKHISANPVCGTNIRAPELAVKGAPGRKCVQ*
Ga0099626_100468	Ga0099626_10046811	F097493	MYKFHMKNGTAYFYEHGVEIDGTVYGIHTDRDILRIKRRIVNDKFAETDDNFDMGVEIAKIQHTDITFEQPTAEQLEQIQAKTYNSMTELKQHVQSVMNGDETMSQDEINAMLMLQIAELKAGVGGE*
Ga0099626_100674	Ga0099626_1006749	F073656	MEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHNYLLDPSTVTEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGAVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVDPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIHTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH*
Ga0099626_100844	Ga0099626_10084424	F071325	FGIVFRDFPSRLRFHKFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFRYFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL*
Ga0099626_100982	Ga0099626_1009821	F071325	FGIVFRDFPSRLRFHKFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFSKAFHPHAVRFPAAFLLVHRFYLDFEELLSCATAYL*
Ga0099626_101388	Ga0099626_1013882	F090513	MLKMFAMAKYVRKMEWKLLHIKHILYMRPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFTY*
Ga0099626_101489	Ga0099626_1014895	F042936	MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKAHFRSRLRGKG*
Ga0099626_101613	Ga0099626_1016131	F078822	LSSTFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL*
Ga0099626_101863	Ga0099626_1018631	F071325	FGIVFRDFPSRLRFHKFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFSKAFHPHAVRFPAAFLLVHRFYLVFEELLSCATVYL*
Ga0099626_102097	Ga0099626_1020976	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLAQNPAALVETDDIFDISDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAVASQSKSAYILSFLESPCILCSLLRYFHILSKKLQKTC*
Ga0099626_102246	Ga0099626_1022462	F087334	MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAAALFGYREKHP*
Ga0099626_104137	Ga0099626_1041371	F026592	TASPQGIAALAAQGGVATLTERSDATFSVKQFSSADGE*
Ga0099626_104291	Ga0099626_1042912	F090515	VTTCCKAGPTAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVPAFTALLCRHIGSIRTFLKS*
Ga0099626_108350	Ga0099626_1083502	F092227	MNEEKRKRFLRIGCLLLAGVFLLSVLGSVVLMLLV*