3300023545: Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_198C

Overview

Basic Information

• IMG/M Taxon OID: 3300023545
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133482 | Gp0296393 | Ga0257041
• Sample Name: Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_198C
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Irvine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 147124362
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	2
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Child Gut Microbiome
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Northridge, California
• Coordinates
  • Lat. (^o): 34.2381
  • Long. (^o): -118.5301
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047755	Metagenome	149	Y
F059106	Metagenome	134	N
F068855	Metagenome	124	N
F078693	Metagenome	116	N
F081453	Metagenome	114	N
F090514	Metagenome	108	N
F090515	Metagenome	108	N
F097493	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0257041_100121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	101682
Ga0257041_100370	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	56696
Ga0257041_101393	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	19917
Ga0257041_101492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	18596
Ga0257041_104339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	6772
Ga0257041_106492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	4660
Ga0257041_109407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3335
Ga0257041_114971	All Organisms → Viruses → Predicted Viral	2241
Ga0257041_117271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1991

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0257041_100121	Ga0257041_10012123	F068855	VPTVEAQGPQVRKSLAAQGLQAEKENENANVQNAGWLHSFDADYHYHGSDLHYHVNVSAALSEGGTVW
Ga0257041_100370	Ga0257041_10037051	F047755	MDNDKVKYLIDMINDMDIKNKLRLAICMSQSERSGLIYNTKENYEKFDNMLKSIDEEYRTTLVNFEKYKLVMFAMAKLMEIETTEQNKIALYLFNTLN
Ga0257041_101393	Ga0257041_10139322	F081453	MSPFFLLAGDNIIEKHISANPVCGTNIRAPELAVKGAPGRKCIQ
Ga0257041_101492	Ga0257041_1014927	F047755	MEQEKVKYLIEMINNMDIKDKLRLAICMSQSKWSGLIYNTKEYYEKFDSMLKDIDKEYRTTLINFGKYKLVMFAMAKLMEMETTEQNKVALYLYNNIMQITTKSLNLM
Ga0257041_104339	Ga0257041_1043393	F078693	LRAKREPEKHQRRAPVRGAERFFIKADCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGEVETEKS
Ga0257041_106492	Ga0257041_1064926	F090515	VRTCCKASPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKALAFTALLCRHIGSIRT
Ga0257041_109407	Ga0257041_1094073	F090514	MNLRIHALKKASRQRPGVKTAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADILPRLTGAKWFVILLTIVPAGSRARAGSSLPLSPASIFF
Ga0257041_114971	Ga0257041_1149714	F097493	MYKFYMKNGTAQFYERGVEIDGTVYGIHADRDILRIKRRIVNDKFAETDDNFDMDTEIAKIQHTDVTFEQPTAEQLKQIQSKTFDSMSELKQHVQSVMNGDETMSQDEINAMLLLKIAEMEVAITNEQTTN
Ga0257041_117271	Ga0257041_1172714	F059106	MHAIVWKIRVILLQIFVWIVDLKVRERLTEYLKKDIKYHQVIIEVLV