3300014784: Human fecal microbial communities from obese patients in Germany - AS63_18

Overview

Basic Information

• IMG/M Taxon OID: 3300014784
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151585 | Ga0134413
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS63_18
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 111392802
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052660	Metagenome	142	N
F067844	Metagenome	125	N
F081453	Metagenome	114	N
F088914	Metagenome	109	N
F089054	Metagenome	109	N
F099269	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134413_1000548	Not Available	15104
Ga0134413_1016054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1199
Ga0134413_1020854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	958
Ga0134413_1025664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	803
Ga0134413_1029961	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	703
Ga0134413_1036410	All Organisms → cellular organisms → Bacteria → Terrabacteria group	595

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134413_1000548	Ga0134413_100054819	F089054	MLTSGRFLVSFEVPGPLPGTTEGFCEEMNVVYRTEELNTYLRYPKQEINPWDKHSTYIRLKLREILKVNLTDITIIDIISLP*
Ga0134413_1016054	Ga0134413_10160541	F067844	MNTLAAETTSAWYLILNRKRQTLPIYISQLSSHLPRPLTMGTQQVSAGADVITPQH
Ga0134413_1020854	Ga0134413_10208541	F052660	MCILHVLPENTPERIGQERAGTEWTVVKSKIRLCIRNRSYGRFFYGGILMGIALPIPAHRAKSHDFACWWPAAADHSRSADALPGKSNF*
Ga0134413_1025664	Ga0134413_10256641	F081453	MSPFFLWIGENIIEKYISANPVCGTNIKAPEPAVKGTPQKQLRIP*
Ga0134413_1029961	Ga0134413_10299612	F088914	VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDSLFSVPYTPKENIKNPGEFIVFSAWYAAKALEMDVK*
Ga0134413_1036410	Ga0134413_10364101	F099269	VGELLLLDDLGDRASGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINDRLSHGSFLSLCETRP