Basic Information | |
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IMG/M Taxon OID | 3300000286 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0045762 | Gp0053763 | Ga0011195 |
Sample Name | Human fecal microbial communities from Cork, Ireland - EM268 |
Sequencing Status | Permanent Draft |
Sequencing Center | Beijing Genomics Institute (BGI), Macrogen |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 106092834 |
Sequencing Scaffolds | 21 |
Novel Protein Genes | 21 |
Associated Families | 18 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 4 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 2 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Pseudoflavonifractor → Pseudoflavonifractor capillosus | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium | 1 |
Not Available | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 3 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 3 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
Location Information | ||||||||
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Location | Cork, Ireland | |||||||
Coordinates | Lat. (o) | 51.907 | Long. (o) | -8.472 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F026489 | Metagenome | 197 | N |
F029444 | Metagenome | 188 | Y |
F032286 | Metagenome / Metatranscriptome | 180 | Y |
F044554 | Metagenome | 154 | N |
F047125 | Metagenome / Metatranscriptome | 150 | N |
F055715 | Metagenome | 138 | N |
F056682 | Metagenome | 137 | Y |
F059106 | Metagenome | 134 | N |
F067845 | Metagenome | 125 | N |
F073656 | Metagenome | 120 | N |
F076064 | Metagenome | 118 | N |
F081354 | Metagenome | 114 | Y |
F081453 | Metagenome | 114 | N |
F087336 | Metagenome | 110 | N |
F088920 | Metagenome | 109 | Y |
F088921 | Metagenome | 109 | N |
F092227 | Metagenome | 107 | N |
F105374 | Metagenome | 100 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
EM268_1001772 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 1184 | Open in IMG/M |
EM268_1004706 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes | 1716 | Open in IMG/M |
EM268_1005172 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 3620 | Open in IMG/M |
EM268_1006982 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 1796 | Open in IMG/M |
EM268_1008458 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii | 9827 | Open in IMG/M |
EM268_1014533 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium | 1195 | Open in IMG/M |
EM268_1015098 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 8429 | Open in IMG/M |
EM268_1018565 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 5769 | Open in IMG/M |
EM268_1018917 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Pseudoflavonifractor → Pseudoflavonifractor capillosus | 6221 | Open in IMG/M |
EM268_1022758 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium | 589 | Open in IMG/M |
EM268_1023082 | Not Available | 593 | Open in IMG/M |
EM268_1025812 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 2183 | Open in IMG/M |
EM268_1048564 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1461 | Open in IMG/M |
EM268_1048806 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 4611 | Open in IMG/M |
EM268_1050023 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 49744 | Open in IMG/M |
EM268_1052874 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 6944 | Open in IMG/M |
EM268_1056909 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 3850 | Open in IMG/M |
EM268_1058511 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1219 | Open in IMG/M |
EM268_1061218 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 3168 | Open in IMG/M |
EM268_1064275 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 8809 | Open in IMG/M |
EM268_1066281 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia | 4577 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
---|---|---|---|
EM268_1001772 | EM268_10017722 | F026489 | LTPKENQKSASDFDALEPRKRGCTPLLTPKQWATPEKTEDSRLFGVKIF* |
EM268_1004706 | EM268_10047063 | F105374 | MKKRVALLVALCIWKVVAAQTPYGEMPERFWPDTLPCRLGGGVCFGMNGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVVRSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP* |
EM268_1005172 | EM268_10051723 | F087336 | MHCLLRGMVAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIRLAEQRQVAFLEIAFQILPLKSKQKKSPPRGKLSKCSFRK* |
EM268_1006982 | EM268_10069821 | F067845 | MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGIAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMGYTGDLNKFLYWSGCYGVPEDVTVALLLDDSTAMTAQLYAPQADSAAAELLEDAAGHSELGAVFIDYNGTAYVVAVFR* |
EM268_1008458 | EM268_10084586 | F076064 | LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELIRLKLQPRHVVANDEAYYAVMKGVSLFTPEAEKLMLTEDYFSARRQIRLCAPDLKRRNETRRHPMPVLKLY* |
EM268_1014533 | EM268_10145333 | F088921 | LGATIRLYKIWAGENHFLCSEKSKSTVFDLDRETKKRKYAKGTCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKLAMIRDKMRSK* |
EM268_1015098 | EM268_10150984 | F059106 | MHVIAWKIRAILLQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVLV* |
EM268_1018565 | EM268_10185654 | F073656 | MTMEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHNYLLDPSTVTEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGAVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVDPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIHTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH* |
EM268_1018917 | EM268_10189179 | F029444 | MEVSEQLTGFELEDLMSWTVSALRRPFREDFSLEKSGIIAEKGAQIFGRRFVGFDGPKKAAPFFNF* |
EM268_1022758 | EM268_10227581 | F081354 | NQQSSAHNFVKDFSSFFPESRRRSPLKKGAVATIPLEYGKAEVQTLFEPLQATISSMELPKNFENKKLPNTLRRLAFFPFHL* |
EM268_1023082 | EM268_10230821 | F044554 | SASPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFDQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFDSHRYCFSAFLVL* |
EM268_1025812 | EM268_10258123 | F092227 | MNEQKRKRMLRIACLLLAGVFVLSLLGSIFMMLLF* |
EM268_1048564 | EM268_10485642 | F088920 | VSANLHHYPAFWAGLILHLILHFSQKVAIFVPKRAISLLFVPKLFFAGLSVLFPQTSPKISGQTSLYQPWLSPYCLFKD* |
EM268_1048806 | EM268_10488065 | F056682 | MKTQSRAGKAANQPIRQGEIYSASFGAFPSKNRSTFPIQKLGKIYENQEVL* |
EM268_1050023 | EM268_105002378 | F055715 | MNELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIRVGTAEILDN* |
EM268_1052874 | EM268_105287410 | F032286 | MVKWVCQIVTPIRHRALVFNTRLFAGTAADDALVTGSTLSFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADYRTEQKTISPFSLALILTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRC |
EM268_1056909 | EM268_10569098 | F055715 | LTKADEFDKINELLIERTAKKFERASKNRLKKFLTNEKLCDKINELIRVGTAEILDN* |
EM268_1058511 | EM268_10585112 | F088920 | VSARPHYYPAFWVGVILHLILHFSKKAVIFALKRAILLLFIPTLFFAGLSVFSPQTSPKISGQTSLYQP |
EM268_1061218 | EM268_10612185 | F047125 | MDVALLLVVLGVMLSGFRAADALDHMRKEIIRQEGKRRGWWS* |
EM268_1064275 | EM268_106427510 | F081453 | AGDNIIEKHISANPVCRTNIRAPELAVKGAPGRKCVQ* |
EM268_1066281 | EM268_10662814 | F081453 | MSPFFLWIGENIIEKYISANPVCGTNIKEPELAVKGTPQKQLRIP* |
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