NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000286

3300000286: Human fecal microbial communities from Cork, Ireland - EM268



Overview

Basic Information
IMG/M Taxon OID3300000286 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0045762 | Gp0053763 | Ga0011195
Sample NameHuman fecal microbial communities from Cork, Ireland - EM268
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI), Macrogen
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size106092834
Sequencing Scaffolds21
Novel Protein Genes21
Associated Families18

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Pseudoflavonifractor → Pseudoflavonifractor capillosus1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium1
Not Available1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationCork, Ireland
CoordinatesLat. (o)51.907Long. (o)-8.472Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F029444Metagenome188Y
F032286Metagenome / Metatranscriptome180Y
F044554Metagenome154N
F047125Metagenome / Metatranscriptome150N
F055715Metagenome138N
F056682Metagenome137Y
F059106Metagenome134N
F067845Metagenome125N
F073656Metagenome120N
F076064Metagenome118N
F081354Metagenome114Y
F081453Metagenome114N
F087336Metagenome110N
F088920Metagenome109Y
F088921Metagenome109N
F092227Metagenome107N
F105374Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
EM268_1001772All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1184Open in IMG/M
EM268_1004706All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes1716Open in IMG/M
EM268_1005172All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae3620Open in IMG/M
EM268_1006982All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1796Open in IMG/M
EM268_1008458All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii9827Open in IMG/M
EM268_1014533All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium1195Open in IMG/M
EM268_1015098All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae8429Open in IMG/M
EM268_1018565All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales5769Open in IMG/M
EM268_1018917All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Pseudoflavonifractor → Pseudoflavonifractor capillosus6221Open in IMG/M
EM268_1022758All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium589Open in IMG/M
EM268_1023082Not Available593Open in IMG/M
EM268_1025812All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2183Open in IMG/M
EM268_1048564All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1461Open in IMG/M
EM268_1048806All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes4611Open in IMG/M
EM268_1050023All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes49744Open in IMG/M
EM268_1052874All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes6944Open in IMG/M
EM268_1056909All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae3850Open in IMG/M
EM268_1058511All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1219Open in IMG/M
EM268_1061218All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii3168Open in IMG/M
EM268_1064275All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales8809Open in IMG/M
EM268_1066281All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia4577Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
EM268_1001772EM268_10017722F026489LTPKENQKSASDFDALEPRKRGCTPLLTPKQWATPEKTEDSRLFGVKIF*
EM268_1004706EM268_10047063F105374MKKRVALLVALCIWKVVAAQTPYGEMPERFWPDTLPCRLGGGVCFGMNGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVVRSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP*
EM268_1005172EM268_10051723F087336MHCLLRGMVAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIRLAEQRQVAFLEIAFQILPLKSKQKKSPPRGKLSKCSFRK*
EM268_1006982EM268_10069821F067845MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGIAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMGYTGDLNKFLYWSGCYGVPEDVTVALLLDDSTAMTAQLYAPQADSAAAELLEDAAGHSELGAVFIDYNGTAYVVAVFR*
EM268_1008458EM268_10084586F076064LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELIRLKLQPRHVVANDEAYYAVMKGVSLFTPEAEKLMLTEDYFSARRQIRLCAPDLKRRNETRRHPMPVLKLY*
EM268_1014533EM268_10145333F088921LGATIRLYKIWAGENHFLCSEKSKSTVFDLDRETKKRKYAKGTCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKLAMIRDKMRSK*
EM268_1015098EM268_10150984F059106MHVIAWKIRAILLQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVLV*
EM268_1018565EM268_10185654F073656MTMEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHNYLLDPSTVTEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGAVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVDPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIHTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH*
EM268_1018917EM268_10189179F029444MEVSEQLTGFELEDLMSWTVSALRRPFREDFSLEKSGIIAEKGAQIFGRRFVGFDGPKKAAPFFNF*
EM268_1022758EM268_10227581F081354NQQSSAHNFVKDFSSFFPESRRRSPLKKGAVATIPLEYGKAEVQTLFEPLQATISSMELPKNFENKKLPNTLRRLAFFPFHL*
EM268_1023082EM268_10230821F044554SASPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFDQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFDSHRYCFSAFLVL*
EM268_1025812EM268_10258123F092227MNEQKRKRMLRIACLLLAGVFVLSLLGSIFMMLLF*
EM268_1048564EM268_10485642F088920VSANLHHYPAFWAGLILHLILHFSQKVAIFVPKRAISLLFVPKLFFAGLSVLFPQTSPKISGQTSLYQPWLSPYCLFKD*
EM268_1048806EM268_10488065F056682MKTQSRAGKAANQPIRQGEIYSASFGAFPSKNRSTFPIQKLGKIYENQEVL*
EM268_1050023EM268_105002378F055715MNELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIRVGTAEILDN*
EM268_1052874EM268_105287410F032286MVKWVCQIVTPIRHRALVFNTRLFAGTAADDALVTGSTLSFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADYRTEQKTISPFSLALILTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRC
EM268_1056909EM268_10569098F055715LTKADEFDKINELLIERTAKKFERASKNRLKKFLTNEKLCDKINELIRVGTAEILDN*
EM268_1058511EM268_10585112F088920VSARPHYYPAFWVGVILHLILHFSKKAVIFALKRAILLLFIPTLFFAGLSVFSPQTSPKISGQTSLYQP
EM268_1061218EM268_10612185F047125MDVALLLVVLGVMLSGFRAADALDHMRKEIIRQEGKRRGWWS*
EM268_1064275EM268_106427510F081453AGDNIIEKHISANPVCRTNIRAPELAVKGAPGRKCVQ*
EM268_1066281EM268_10662814F081453MSPFFLWIGENIIEKYISANPVCGTNIKEPELAVKGTPQKQLRIP*

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