3300008499: Human stool microbial communities from NIH, USA - visit 1, subject 159490532 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008499
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052917 | Ga0111012
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 159490532 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 95252405
• Sequencing Scaffolds: 3
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F074964	Metagenome	119	N
F081453	Metagenome	114	N
F090484	Metagenome	108	N
F098313	Metagenome	104	N
F099406	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111012_100046	Not Available	144397
Ga0111012_100235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	56715
Ga0111012_102810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	4839

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111012_100046	Ga0111012_100046171	F098313	MKEKEFDFVIYPLKLIITIGLDYKTLCDRFENAELDHEGEWGDEGDLDSEVSFMNLVRDKGDDRAFKLLWNFQSENDMTIQNICHESFHAAMSVCQHCNMSLGFKVGEDEHAAYIAGFVGNCAGEMFGFLEEEKDGKEN*
Ga0111012_100046	Ga0111012_10004627	F099406	MAEVGYNSKFEGLEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQGGSKTLLSNMTWGDYVNKKYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEESGGKVLESLGMVSTGVDSNYLDLSMFSGNSGTLDEGSFGKVLDAYNNKITLGKLAGNYYSLDYFLEGRDFEGVFELKIVLVSFLDANTGESVSESDIEIQVGTYTVTQDKAYKVLNNMVTLSNTMMSYLRFMSKAPRVVTTLANLPKDTHNIIANVASATNLSMTVSSEYVGREWQARVNNTTGTDITQPLPTSGQFQSMSGDSVVIPKNSFIELNIWYINDKLVIRVGEQA*
Ga0111012_100046	Ga0111012_10004647	F090484	MIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFNELFRVTDSTFVARRYRVNGVQLTLGCGKVSLPKNRILIKIKKNEITNHEKVLDRIKEAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENVQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWALYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIVRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKTYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNINTTVDNDKELDGESVFKDIPLEELSFYNDTYLYSSSQYSSL*
Ga0111012_100046	Ga0111012_10004671	F074964	MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAICKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFIKFSLYSKVYKDNKVDKEKGIEAKTADWCAENVVYGSEYKAFGFTTAESLETKKSTKWLIKETDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESNQQ*
Ga0111012_100235	Ga0111012_10023555	F081453	MFPFFLLAGENIIEKHISANPVCGTNIKASEPAVKGTPGRKFM*
Ga0111012_102810	Ga0111012_1028106	F026592	NLLAANSILCCLRTASPQGIDAQASQGSVAPLTERSDETFSVKQFFSADRE*