Sample 3300029256

Overview

Basic Information
IMG/M Taxon OID	3300029256 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127425 \| Gp0193096 \| Ga0168827
Sample Name	Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021226-74
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	169546042
Sequencing Scaffolds	13
Novel Protein Genes	13
Associated Families	13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal secretion

Location Information
Location	China: Beijing, Peking Union Medical College
Coordinates	Lat. (^o)	39.911947	Long. (^o)	116.4156125	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F044554	Metagenome	154	N
F047126	Metagenome	150	N
F052660	Metagenome	142	N
F066905	Metagenome	126	Y
F068811	Metagenome	124	N
F070093	Metagenome	123	N
F081453	Metagenome	114	N
F082887	Metagenome / Metatranscriptome	113	Y
F089005	Metagenome	109	N
F090515	Metagenome	108	N
F097493	Metagenome	104	Y
F101355	Metagenome	102	N

Family

Category

Number of Sequences

3D Structure?

F042936

Metagenome

157

F044554

Metagenome

154

F047126

Metagenome

150

F052660

Metagenome

142

F066905

Metagenome

126

F068811

Metagenome

124

F070093

Metagenome

123

F081453

Metagenome

114

F082887

Metagenome / Metatranscriptome

113

F089005

Metagenome

109

F090515

Metagenome

108

F097493

Metagenome

104

F101355

Metagenome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0168827_100088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	146140	Open in IMG/M
Ga0168827_100819	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	36475	Open in IMG/M
Ga0168827_101153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	27028	Open in IMG/M
Ga0168827_101983	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	15622	Open in IMG/M
Ga0168827_102134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	14259	Open in IMG/M
Ga0168827_102177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	13903	Open in IMG/M
Ga0168827_102719	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	10658	Open in IMG/M
Ga0168827_103406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	8120	Open in IMG/M
Ga0168827_103666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	7382	Open in IMG/M
Ga0168827_104861	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5142	Open in IMG/M
Ga0168827_108505	All Organisms → Viruses → Predicted Viral	2590	Open in IMG/M
Ga0168827_110950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1902	Open in IMG/M
Ga0168827_126976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	687	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0168827_100088

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

146140

Open in IMG/M

Ga0168827_100819

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

36475

Open in IMG/M

Ga0168827_101153

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena

27028

Open in IMG/M

Ga0168827_101983

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

15622

Open in IMG/M

Ga0168827_102134

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

14259

Open in IMG/M

Ga0168827_102177

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

13903

Open in IMG/M

Ga0168827_102719

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia

10658

Open in IMG/M

Ga0168827_103406

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

8120

Open in IMG/M

Ga0168827_103666

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

7382

Open in IMG/M

Ga0168827_104861

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

5142

Open in IMG/M

Ga0168827_108505

All Organisms → Viruses → Predicted Viral

2590

Open in IMG/M

Ga0168827_110950

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

1902

Open in IMG/M

Ga0168827_126976

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

687

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0168827_100088	Ga0168827_10008869	F082887	MEKLKTIAKYLTNILAIVSALVAGINAVDGITIPYAIQIVQVIAVVQGVIGTYLLGQKAISNKEE
Ga0168827_100819	Ga0168827_1008191	F089005	LTKSKQRSIIALALLRLATSSEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSE
Ga0168827_101153	Ga0168827_1011531	F070093	LLLAEFYPFRIDPPMEPEQERLSKLYSGSGIHSLSELNPKSTQTLS
Ga0168827_101983	Ga0168827_10198311	F090515	VTTCCKASPKAALQGTAPGRVACLEFAGEEKRKTNIAADYAVKALAFTALLCRNIGSIRTFLKL
Ga0168827_102134	Ga0168827_1021341	F066905	MEENRNCGCNNGGLLNGLFGGCGCGDDSTILFFIIIFLLLFTNFGCGCGR
Ga0168827_102177	Ga0168827_10217711	F047126	VYLKTKKMMNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPHPPPPFAQRFIACFCSQTAAASQSKSAHILSPLESPCILCSLLRYFHILSKKLQKTC
Ga0168827_102719	Ga0168827_10271913	F081453	MFPFFLLAGENIIEKHISENPVCGTNIKAPEPAVKGAPGRKFV
Ga0168827_103406	Ga0168827_1034064	F068811	MDQDGSEHNICSNREGLCPGKKQHGASGWKKIFQHGKEPLRSKDSVSQYCNKKVAVSLILNENVSETLCIFSIDKTNCCRIK
Ga0168827_103666	Ga0168827_1036662	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFFSFPFSFRANFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
Ga0168827_104861	Ga0168827_1048612	F042936	MGRGGGKGLVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSWLRGK
Ga0168827_108505	Ga0168827_1085057	F097493	IDGTVYGIHADRDILRIKRRIVNDKFAETDGDFDMDTEIAKIKHTDITFEQPTAEQLSQIQSKTFDSMSDMKQYVQSVMNGDETMSQDEINAMLLLKIAEMEVAITNEQTTN
Ga0168827_110950	Ga0168827_1109502	F101355	MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKGAGAVFPYVLPRCSYFFKIFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFCKKLLPYVLFFFFKIYLKKIDFFQNIA
Ga0168827_126976	Ga0168827_1269761	F052660	PENTPEKIGQERAGTEWTVVKSKIRLCIRNRSCGRFPHGGILMGIVLPIPSHRAKSHDFAHWWPATAGHSRSVDALPGKSNH

Scaffold ID

Protein ID

Family

Sequence

Ga0168827_100088

Ga0168827_10008869

F082887

MEKLKTIAKYLTNILAIVSALVAGINAVDGITIPYAIQIVQVIAVVQGVIGTYLLGQKAISNKEE

Ga0168827_100819

Ga0168827_1008191

F089005

LTKSKQRSIIALALLRLATSSEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSE

Ga0168827_101153

Ga0168827_1011531

F070093

LLLAEFYPFRIDPPMEPEQERLSKLYSGSGIHSLSELNPKSTQTLS

Ga0168827_101983

Ga0168827_10198311

F090515

VTTCCKASPKAALQGTAPGRVACLEFAGEEKRKTNIAADYAVKALAFTALLCRNIGSIRTFLKL

Ga0168827_102134

Ga0168827_1021341

F066905

MEENRNCGCNNGGLLNGLFGGCGCGDDSTILFFIIIFLLLFTNFGCGCGR

Ga0168827_102177

Ga0168827_10217711

F047126

VYLKTKKMMNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPHPPPPFAQRFIACFCSQTAAASQSKSAHILSPLESPCILCSLLRYFHILSKKLQKTC

Ga0168827_102719

Ga0168827_10271913

F081453

MFPFFLLAGENIIEKHISENPVCGTNIKAPEPAVKGAPGRKFV

Ga0168827_103406

Ga0168827_1034064

F068811

MDQDGSEHNICSNREGLCPGKKQHGASGWKKIFQHGKEPLRSKDSVSQYCNKKVAVSLILNENVSETLCIFSIDKTNCCRIK

Ga0168827_103666

Ga0168827_1036662

F044554

VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFFSFPFSFRANFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL

Ga0168827_104861

Ga0168827_1048612

F042936

MGRGGGKGLVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSWLRGK

Ga0168827_108505

Ga0168827_1085057

F097493

IDGTVYGIHADRDILRIKRRIVNDKFAETDGDFDMDTEIAKIKHTDITFEQPTAEQLSQIQSKTFDSMSDMKQYVQSVMNGDETMSQDEINAMLLLKIAEMEVAITNEQTTN

Ga0168827_110950

Ga0168827_1109502

F101355

MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKGAGAVFPYVLPRCSYFFKIFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFCKKLLPYVLFFFFKIYLKKIDFFQNIA

Ga0168827_126976

Ga0168827_1269761

F052660

PENTPEKIGQERAGTEWTVVKSKIRLCIRNRSCGRFPHGGILMGIVLPIPSHRAKSHDFAHWWPATAGHSRSVDALPGKSNH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029256: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021226-74

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences