| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029830 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133139 | Gp0283773 | Ga0245137 |
| Sample Name | Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36034 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Beijing Genomics Institute (BGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 182375223 |
| Sequencing Scaffolds | 21 |
| Novel Protein Genes | 23 |
| Associated Families | 23 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 5 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 4 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1 |
| Not Available | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Carnobacteriaceae → Trichococcus → Trichococcus palustris | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 2 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | United Kingdom: London | |||||||
| Coordinates | Lat. (o) | 51.5 | Long. (o) | -0.12 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013656 | Metagenome | 269 | Y |
| F026592 | Metagenome / Metatranscriptome | 197 | Y |
| F042095 | Metagenome | 159 | N |
| F044554 | Metagenome | 154 | N |
| F047125 | Metagenome / Metatranscriptome | 150 | N |
| F055715 | Metagenome | 138 | N |
| F057001 | Metagenome | 137 | Y |
| F057385 | Metagenome | 136 | N |
| F058555 | Metagenome | 135 | N |
| F064725 | Metagenome | 128 | N |
| F068941 | Metagenome | 124 | N |
| F073573 | Metagenome | 120 | N |
| F075480 | Metagenome | 119 | N |
| F075481 | Metagenome | 119 | N |
| F076064 | Metagenome | 118 | N |
| F078005 | Metagenome | 117 | N |
| F078693 | Metagenome | 116 | N |
| F081453 | Metagenome | 114 | N |
| F083451 | Metagenome | 113 | N |
| F089005 | Metagenome | 109 | N |
| F093883 | Metagenome | 106 | N |
| F101356 | Metagenome | 102 | N |
| F102167 | Metagenome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0245137_100340 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 65559 | Open in IMG/M |
| Ga0245137_100405 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 57092 | Open in IMG/M |
| Ga0245137_100825 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 31108 | Open in IMG/M |
| Ga0245137_101011 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 26041 | Open in IMG/M |
| Ga0245137_101481 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii | 17744 | Open in IMG/M |
| Ga0245137_101509 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 17524 | Open in IMG/M |
| Ga0245137_103840 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 6823 | Open in IMG/M |
| Ga0245137_104028 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 6476 | Open in IMG/M |
| Ga0245137_105017 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 5122 | Open in IMG/M |
| Ga0245137_105563 | Not Available | 4572 | Open in IMG/M |
| Ga0245137_106194 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 4087 | Open in IMG/M |
| Ga0245137_106769 | Not Available | 3718 | Open in IMG/M |
| Ga0245137_107804 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 3184 | Open in IMG/M |
| Ga0245137_115692 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1582 | Open in IMG/M |
| Ga0245137_120992 | Not Available | 1183 | Open in IMG/M |
| Ga0245137_121545 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Carnobacteriaceae → Trichococcus → Trichococcus palustris | 1153 | Open in IMG/M |
| Ga0245137_121682 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 1145 | Open in IMG/M |
| Ga0245137_123774 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 1043 | Open in IMG/M |
| Ga0245137_129027 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 853 | Open in IMG/M |
| Ga0245137_138529 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 642 | Open in IMG/M |
| Ga0245137_138733 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes | 639 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0245137_100340 | Ga0245137_10034044 | F057385 | MKKLLAVLLSIMMLAMPLTSMAENSVWDNAARQETTITIHNLNADLVAALGGDDTTMAAINDLLAALSLTGYQQGDEAGFDLNLSGKSVLGMASLTTAAEENQLMYVSSALLGGVIAVNSKDVEAIKEKALRATMKMSGQSDEEIDKAIEESKEQLSGNAEYTALMEASANLSSMTEEQLMEELTQADTTAFMTMMNEILSGAEMAEVTEQPGDCDAAKNYVKVTVPPEKIAEMTKALLEMIHSVPSIGAYMDALFSAADTSWDDLLKELDEADLYADDIVYEYWMTEAGELVRMTASVKINNGGEEPLPMSFTATRNTADGVATWLVTIKSAEDTAATLTFAGDLENFTANLTAYAGEDSVEINVSGKGIGTDSSVVDVEIKETVDGVEQGFGVVVTTATTMDGEQGVRKVDVLVRFMGLDVVTITAETRTCDAKDALDVSKVQDLGAMTDSEFQTWFVKVMNNLQNLPMTLLMSLPESMLTLLMGGSN |
| Ga0245137_100405 | Ga0245137_10040542 | F073573 | MPTIVSFYQRFPNEAPPLNLSAFDRTGYTYAENFRRNERCYEAEQCEVTSDDGSVVLSLDVRIRPRGGEIEALPRVMLSVYSEGMLFQVRRMELRTGDTTYAILPDNVQQYTKRGDTDGGFLETMAIPLGKVGMKMLLEASDAAEARWVIQGARTAQTLPLTAAQKKAIRRFCMDCEESAITYQPAFLWYKDYCTKA |
| Ga0245137_100825 | Ga0245137_10082532 | F013656 | MEKIYKEPNKSETETTINVLYSENMLSIYTNKVNLQKQLNKLLGVPTKEDKIKRSIAGSRWNISLDDKTKIQKIILKANIYEL |
| Ga0245137_101011 | Ga0245137_10101119 | F081453 | MSPFFLWIGENIVEKHISANPVCGTNIRAPELAVKGALGRKCVQ |
| Ga0245137_101481 | Ga0245137_10148123 | F089005 | LTKSKQRSIITLALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSEMYTKK |
| Ga0245137_101509 | Ga0245137_1015094 | F075480 | MNKTKQEKWQRAYGDTPDSFRQRVAASLPKGEESRHVAFPRRAMVLAAALVLVLTTAYAAVVTHTELVWNAGHPIENEADDRLGLLTGKAGTSGDSLTIGGVTFTVQDGIYSPETGQLFASAVISADESVQLVGVESDMEWEVRAVTPVSEKLDPSGISWAEWAEQNGKTLVPVRMEIRGSEQFPNIPMFCDFLTQNPDGTVSVGFQVDLSEEDVSHLKSCEVQLECRVGAFGKDGKATQWQKEILTATITFK |
| Ga0245137_103840 | Ga0245137_10384014 | F102167 | IDHGIIDLDIMNGKMMGEYVAMLMIRSCEKATKSYTLTSFSFHDKDMDKLRMLIGNAIMAVGYRNNPLTGDGNTTIK |
| Ga0245137_103840 | Ga0245137_1038403 | F057001 | VNLMTNKELNKVQNEVKKASEKTLTGAVKAWCQLFKSGKEVNEILKENEIKVDKSIVPALVNLAKDKEIVIQLCKEILPRVNNTFCAYKEVEREYYDKNDQDKNKKLKMNEIEDVAILGSSHKRFGYNEPIEFDFGIYYEAFNGTDKRIVKCAVPIKRYTFSLIAKCITYYLTHPKNDR |
| Ga0245137_104028 | Ga0245137_1040283 | F042095 | MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVDNPFNTYVEFRSRKPGMANVDWGDGIKEQFPMTKVQGRDDYCIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPIDNHAYADGRRDVQRAVSIDFTCDIYYVNIQNCKMTAFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVMPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNIQTLELSSCYLDRYIKEFNELPKLTTLKIHPGPSDMWNYFDINTLPFFEVDKINPNITDFSFLDDWVSGERRTGWNDDNMSGRGLEHLTIFIAAHSNSLRMDKLPDYIYEMRAITWFDVNASTHSQKRSDDFVNSFYDLVIGWDQITMTSMAKDGXXXXXXLWT |
| Ga0245137_105017 | Ga0245137_10501712 | F083451 | MEEKDVLNLLMSRKDIRKLVEKSNKCYSKMDFVGAMKYRKQIKDVIDHESRIMLTRSESLIELMNGSGDEYKFKMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFIKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDEMREMIENMVGDNIREGYDMFKEEAKMTKETDRSKIEEFNKKLDHDQM |
| Ga0245137_105563 | Ga0245137_1055635 | F093883 | MEEDKDIKKDIRDYLKEEADTHIRHWLAIKRESKRLYSEIEDRTKKIALKSSSLIKEDDFVALHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKDMKANATGKTKAD |
| Ga0245137_106194 | Ga0245137_1061947 | F078005 | MKKSKFVKELERIIDMVKTGDDGFEYGGKVIFYKEDDDDYEILVKNIEMNLMVEANTMASMDDRTFACLMGEVYKQKFIKAVTISEDEDDEDN |
| Ga0245137_106769 | Ga0245137_1067694 | F058555 | MGTKIGILHIMKSNFDKIITERYTPRNIQVKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSLKHEEYHGSGIQISDECKMAMIYLIIINVFKHVFLRNRMHGGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDMNYQLISLKAWAEGEIMIALSDIIKYKHRASKTPRIKDMFVKKGESVYTCLDKNLDSNTRRWMANKSRKLNRVKMLSKIIFSARNRNINKIYKVTKKRTVKFNVSYLMDRLNIKLSKEGMMLISQRTVYRMIKEVLSMCCKTISDLYDEVKKNNGIVNTKDRKNITIGHLRLSYRGKIMHIIISEYFIKDVFLGVKGSEMSKAG |
| Ga0245137_107804 | Ga0245137_1078042 | F044554 | VLAGRFIPVSCASIARLFPCRTEIARCLTLDFAISRYLFLSFPFSFRANFAQALFSSLLFVSDTRAKSILFLLFESEIAHLQGQYRFNSHRYCFSAFLVL |
| Ga0245137_115692 | Ga0245137_1156922 | F026592 | CCLRTASPQGIDAQASQGSVAPLTERSDETFSVGQFSSADWE |
| Ga0245137_120992 | Ga0245137_1209922 | F064725 | VRVDWIFFCITDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITERIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQ |
| Ga0245137_121545 | Ga0245137_1215452 | F055715 | LTKANEFDKINELLIERTAKKFERTSKNKLKKFLTNEKFCDKINELIRVGTEKILDN |
| Ga0245137_121682 | Ga0245137_1216823 | F047125 | MDVVLLLMVLGVMLSGFRAADALDHMRKEIIRQEGKRRSW |
| Ga0245137_123774 | Ga0245137_1237741 | F075481 | FLSSCGSRRQVSEASIDSRLISRIETMINEVIDRKMVEIKTSDLNADIVITERKFDTDKDIDPATGERPVSSVTDAHIVIGRRDSTVTTDSLGVDKTITGIEDIDKKTNIKHKDIDDKEESRWPMAIIFMSILGILVVLFVLLKRFGLIK |
| Ga0245137_129027 | Ga0245137_1290272 | F078693 | VGVRAGGAGLERFFIKANVLFCVPKENQKSTSDFDALDPRERGCSPLSDPEGEVETEKS |
| Ga0245137_129775 | Ga0245137_1297752 | F101356 | TTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPSSDFCVYIAGNTMELQDTTKVYVKYMYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ |
| Ga0245137_138529 | Ga0245137_1385291 | F068941 | MDNKKFIFGVIALLLLMIGGTYAYYKWSSTENINVNVKIEGGSVTFNGGSNITGVLIPTATKEGGIKKDITXXXXXXXXXXXXXXXTTMPTELKEKSFEYELYYNDTTLVKKGNFAAYNSSSNVNGISYATSGTTTLTLFTGRDISTTSTDKYTLYLWFNGKDYTNPNTMQNKTLSFDLY |
| Ga0245137_138733 | Ga0245137_1387332 | F076064 | LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELIRLKLQPRHIVANDEAYYAAMKGVMLFTPEAEKLMHRADYYSARRQIRLCAPDLKRRNEAKRPPKPALKFY |
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