NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029830

3300029830: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36034



Overview

Basic Information
IMG/M Taxon OID3300029830 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0133139 | Gp0283773 | Ga0245137
Sample NameHuman fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36034
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size182375223
Sequencing Scaffolds21
Novel Protein Genes23
Associated Families23

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
Not Available3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Carnobacteriaceae → Trichococcus → Trichococcus palustris1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUnited Kingdom: London
CoordinatesLat. (o)51.5Long. (o)-0.12Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013656Metagenome269Y
F026592Metagenome / Metatranscriptome197Y
F042095Metagenome159N
F044554Metagenome154N
F047125Metagenome / Metatranscriptome150N
F055715Metagenome138N
F057001Metagenome137Y
F057385Metagenome136N
F058555Metagenome135N
F064725Metagenome128N
F068941Metagenome124N
F073573Metagenome120N
F075480Metagenome119N
F075481Metagenome119N
F076064Metagenome118N
F078005Metagenome117N
F078693Metagenome116N
F081453Metagenome114N
F083451Metagenome113N
F089005Metagenome109N
F093883Metagenome106N
F101356Metagenome102N
F102167Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0245137_100340All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales65559Open in IMG/M
Ga0245137_100405All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales57092Open in IMG/M
Ga0245137_100825All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes31108Open in IMG/M
Ga0245137_101011All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales26041Open in IMG/M
Ga0245137_101481All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii17744Open in IMG/M
Ga0245137_101509All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales17524Open in IMG/M
Ga0245137_103840All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium6823Open in IMG/M
Ga0245137_104028All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes6476Open in IMG/M
Ga0245137_105017All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium5122Open in IMG/M
Ga0245137_105563Not Available4572Open in IMG/M
Ga0245137_106194All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium4087Open in IMG/M
Ga0245137_106769Not Available3718Open in IMG/M
Ga0245137_107804All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae3184Open in IMG/M
Ga0245137_115692All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1582Open in IMG/M
Ga0245137_120992Not Available1183Open in IMG/M
Ga0245137_121545All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Carnobacteriaceae → Trichococcus → Trichococcus palustris1153Open in IMG/M
Ga0245137_121682All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1145Open in IMG/M
Ga0245137_123774All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1043Open in IMG/M
Ga0245137_129027All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii853Open in IMG/M
Ga0245137_138529All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes642Open in IMG/M
Ga0245137_138733All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes639Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0245137_100340Ga0245137_10034044F057385MKKLLAVLLSIMMLAMPLTSMAENSVWDNAARQETTITIHNLNADLVAALGGDDTTMAAINDLLAALSLTGYQQGDEAGFDLNLSGKSVLGMASLTTAAEENQLMYVSSALLGGVIAVNSKDVEAIKEKALRATMKMSGQSDEEIDKAIEESKEQLSGNAEYTALMEASANLSSMTEEQLMEELTQADTTAFMTMMNEILSGAEMAEVTEQPGDCDAAKNYVKVTVPPEKIAEMTKALLEMIHSVPSIGAYMDALFSAADTSWDDLLKELDEADLYADDIVYEYWMTEAGELVRMTASVKINNGGEEPLPMSFTATRNTADGVATWLVTIKSAEDTAATLTFAGDLENFTANLTAYAGEDSVEINVSGKGIGTDSSVVDVEIKETVDGVEQGFGVVVTTATTMDGEQGVRKVDVLVRFMGLDVVTITAETRTCDAKDALDVSKVQDLGAMTDSEFQTWFVKVMNNLQNLPMTLLMSLPESMLTLLMGGSN
Ga0245137_100405Ga0245137_10040542F073573MPTIVSFYQRFPNEAPPLNLSAFDRTGYTYAENFRRNERCYEAEQCEVTSDDGSVVLSLDVRIRPRGGEIEALPRVMLSVYSEGMLFQVRRMELRTGDTTYAILPDNVQQYTKRGDTDGGFLETMAIPLGKVGMKMLLEASDAAEARWVIQGARTAQTLPLTAAQKKAIRRFCMDCEESAITYQPAFLWYKDYCTKA
Ga0245137_100825Ga0245137_10082532F013656MEKIYKEPNKSETETTINVLYSENMLSIYTNKVNLQKQLNKLLGVPTKEDKIKRSIAGSRWNISLDDKTKIQKIILKANIYEL
Ga0245137_101011Ga0245137_10101119F081453MSPFFLWIGENIVEKHISANPVCGTNIRAPELAVKGALGRKCVQ
Ga0245137_101481Ga0245137_10148123F089005LTKSKQRSIITLALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSEMYTKK
Ga0245137_101509Ga0245137_1015094F075480MNKTKQEKWQRAYGDTPDSFRQRVAASLPKGEESRHVAFPRRAMVLAAALVLVLTTAYAAVVTHTELVWNAGHPIENEADDRLGLLTGKAGTSGDSLTIGGVTFTVQDGIYSPETGQLFASAVISADESVQLVGVESDMEWEVRAVTPVSEKLDPSGISWAEWAEQNGKTLVPVRMEIRGSEQFPNIPMFCDFLTQNPDGTVSVGFQVDLSEEDVSHLKSCEVQLECRVGAFGKDGKATQWQKEILTATITFK
Ga0245137_103840Ga0245137_10384014F102167IDHGIIDLDIMNGKMMGEYVAMLMIRSCEKATKSYTLTSFSFHDKDMDKLRMLIGNAIMAVGYRNNPLTGDGNTTIK
Ga0245137_103840Ga0245137_1038403F057001VNLMTNKELNKVQNEVKKASEKTLTGAVKAWCQLFKSGKEVNEILKENEIKVDKSIVPALVNLAKDKEIVIQLCKEILPRVNNTFCAYKEVEREYYDKNDQDKNKKLKMNEIEDVAILGSSHKRFGYNEPIEFDFGIYYEAFNGTDKRIVKCAVPIKRYTFSLIAKCITYYLTHPKNDR
Ga0245137_104028Ga0245137_1040283F042095MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVDNPFNTYVEFRSRKPGMANVDWGDGIKEQFPMTKVQGRDDYCIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPIDNHAYADGRRDVQRAVSIDFTCDIYYVNIQNCKMTAFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVMPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNIQTLELSSCYLDRYIKEFNELPKLTTLKIHPGPSDMWNYFDINTLPFFEVDKINPNITDFSFLDDWVSGERRTGWNDDNMSGRGLEHLTIFIAAHSNSLRMDKLPDYIYEMRAITWFDVNASTHSQKRSDDFVNSFYDLVIGWDQITMTSMAKDGXXXXXXLWT
Ga0245137_105017Ga0245137_10501712F083451MEEKDVLNLLMSRKDIRKLVEKSNKCYSKMDFVGAMKYRKQIKDVIDHESRIMLTRSESLIELMNGSGDEYKFKMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFIKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDEMREMIENMVGDNIREGYDMFKEEAKMTKETDRSKIEEFNKKLDHDQM
Ga0245137_105563Ga0245137_1055635F093883MEEDKDIKKDIRDYLKEEADTHIRHWLAIKRESKRLYSEIEDRTKKIALKSSSLIKEDDFVALHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKDMKANATGKTKAD
Ga0245137_106194Ga0245137_1061947F078005MKKSKFVKELERIIDMVKTGDDGFEYGGKVIFYKEDDDDYEILVKNIEMNLMVEANTMASMDDRTFACLMGEVYKQKFIKAVTISEDEDDEDN
Ga0245137_106769Ga0245137_1067694F058555MGTKIGILHIMKSNFDKIITERYTPRNIQVKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSLKHEEYHGSGIQISDECKMAMIYLIIINVFKHVFLRNRMHGGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDMNYQLISLKAWAEGEIMIALSDIIKYKHRASKTPRIKDMFVKKGESVYTCLDKNLDSNTRRWMANKSRKLNRVKMLSKIIFSARNRNINKIYKVTKKRTVKFNVSYLMDRLNIKLSKEGMMLISQRTVYRMIKEVLSMCCKTISDLYDEVKKNNGIVNTKDRKNITIGHLRLSYRGKIMHIIISEYFIKDVFLGVKGSEMSKAG
Ga0245137_107804Ga0245137_1078042F044554VLAGRFIPVSCASIARLFPCRTEIARCLTLDFAISRYLFLSFPFSFRANFAQALFSSLLFVSDTRAKSILFLLFESEIAHLQGQYRFNSHRYCFSAFLVL
Ga0245137_115692Ga0245137_1156922F026592CCLRTASPQGIDAQASQGSVAPLTERSDETFSVGQFSSADWE
Ga0245137_120992Ga0245137_1209922F064725VRVDWIFFCITDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITERIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQ
Ga0245137_121545Ga0245137_1215452F055715LTKANEFDKINELLIERTAKKFERTSKNKLKKFLTNEKFCDKINELIRVGTEKILDN
Ga0245137_121682Ga0245137_1216823F047125MDVVLLLMVLGVMLSGFRAADALDHMRKEIIRQEGKRRSW
Ga0245137_123774Ga0245137_1237741F075481FLSSCGSRRQVSEASIDSRLISRIETMINEVIDRKMVEIKTSDLNADIVITERKFDTDKDIDPATGERPVSSVTDAHIVIGRRDSTVTTDSLGVDKTITGIEDIDKKTNIKHKDIDDKEESRWPMAIIFMSILGILVVLFVLLKRFGLIK
Ga0245137_129027Ga0245137_1290272F078693VGVRAGGAGLERFFIKANVLFCVPKENQKSTSDFDALDPRERGCSPLSDPEGEVETEKS
Ga0245137_129775Ga0245137_1297752F101356TTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPSSDFCVYIAGNTMELQDTTKVYVKYMYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ
Ga0245137_138529Ga0245137_1385291F068941MDNKKFIFGVIALLLLMIGGTYAYYKWSSTENINVNVKIEGGSVTFNGGSNITGVLIPTATKEGGIKKDITXXXXXXXXXXXXXXXTTMPTELKEKSFEYELYYNDTTLVKKGNFAAYNSSSNVNGISYATSGTTTLTLFTGRDISTTSTDKYTLYLWFNGKDYTNPNTMQNKTLSFDLY
Ga0245137_138733Ga0245137_1387332F076064LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELIRLKLQPRHIVANDEAYYAAMKGVMLFTPEAEKLMHRADYYSARRQIRLCAPDLKRRNEAKRPPKPALKFY

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