3300000273: Human fecal microbial communities from Cork, Ireland - EM039

Overview

Basic Information

• IMG/M Taxon OID: 3300000273
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045762 | Gp0051616 | Ga0011073
• Sample Name: Human fecal microbial communities from Cork, Ireland - EM039
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI), Macrogen
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 119242887
• Sequencing Scaffolds: 14
• Novel Protein Genes: 16
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-P9312	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter → unclassified Oscillibacter → Oscillibacter sp. MSJ-31	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Cork, Ireland
• Coordinates
  • Lat. (^o): 51.907
  • Long. (^o): -8.472
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F047125	Metagenome / Metatranscriptome	150	N
F062845	Metagenome	130	N
F074899	Metagenome / Metatranscriptome	119	N
F074964	Metagenome	119	N
F076064	Metagenome	118	N
F078004	Metagenome	117	N
F078693	Metagenome	116	N
F081453	Metagenome	114	N
F084124	Metagenome	112	Y
F089053	Metagenome	109	Y
F090514	Metagenome	108	N
F092227	Metagenome	107	N
F098313	Metagenome	104	N
F099406	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
EM039_1000781	All Organisms → cellular organisms → Bacteria	11188
EM039_1002507	Not Available	13936
EM039_1006072	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	11735
EM039_1008539	All Organisms → Viruses → Predicted Viral	1880
EM039_1015611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	16059
EM039_1028771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1588
EM039_1030201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	946
EM039_1031778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1616
EM039_1037172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-P9312	673
EM039_1079169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1214
EM039_1094705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1885
EM039_1101469	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter → unclassified Oscillibacter → Oscillibacter sp. MSJ-31	864
EM039_1102390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	576
EM039_1104282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	566

Sequences

Scaffold ID	Protein ID	Family	Sequence
EM039_1000781	EM039_10007816	F098313	MKEKEFDFVIYPLKLIITIGLYYKTLCDRFENAELDHEGEWGDESDLDSEVSFMNLVRDKRDDRAFKLLWNFQSENNMTIQNICHESFHAAMSVCQHCNMSLGFKVGEDEHAAYIAGFVGNCAGEMFGFLEEEKDGKEE*
EM039_1002507	EM039_10025077	F099406	LINLNENKNMAEVGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDYVNKKYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLESLGMVSTGVDSNYLDLSMFSGNSGTLDEASFGKVLDAYNNKITLGKLAGNYYSLDYFLEGRDFEGAFELKIVFVSFSNTNTGEGVSESDIEIHVGTYTVTQDKNYKALSNMVTLSNTMMSYLRFMSKAPRVVTTLANLPKDTHNIIANVASATSLSMTVSAEDVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGNSVIVPKNSFIELSIWYINDKLVIRVGEQS*
EM039_1003706	EM039_10037061	F078004	MIITEIQYFFSKIIRFQAIFKDTVEFTCALEFKISSQHNITFFQITVFYVPAVSRRIRSLALLSAVSEHLSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDVHMLRHTLIITIINALYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF*
EM039_1006072	EM039_10060726	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSARRQIRLCAPDLKRRNETRRHPMPVLKLY*
EM039_1008539	EM039_10085394	F074964	MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAICKTLEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFSLYSKVYKDNKVDKEKGIEAKTADWCAENVIYGGEYKSFGFSTAETLETKKSAKWLVKETDEYKATYVAVKIKSYSIRTIAKCVSEYLTHESNQQ*
EM039_1015611	EM039_10156113	F084124	LNTTAKAFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFNKLSFSTQTAWLFAPDKLLYLKIFMGAAQTRNF*
EM039_1028771	EM039_10287713	F092227	MNEQKRKRVLRIGCLVLAGVFVLSLLGSIFMMLPL*
EM039_1030201	EM039_10302012	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADIPPRLTGANWFVILLTIVPAGSRTRAGSSLPLIPASNIFLKQTPRRGLPLA*
EM039_1031778	EM039_10317782	F047125	MDVVLLLMVLGVMLSGFRAADALDHMRKEIIRQEGKRRGWWS*
EM039_1037172	EM039_10371722	F062845	MKKAPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNAVPPSSCA*
EM039_1079169	EM039_10791692	F089053	MEGPRPDKFAFGVKLERVVDECRPVKGCIRKWLYIFANGQPELSTAEEVNVKNMEAFL*
EM039_1094705	EM039_10947054	F078693	MVLAPVRGAERFYVKWNCSLLMSKENQKTTSDFDALXPRERGCSPLSDPEGDVETEKS*
EM039_1097919	EM039_10979192	F078693	LRAKREPEKHQRRAAVRGAERFFIKANCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGEVEVEKC*
EM039_1101469	EM039_11014692	F074899	MSGRKQWNKQAATSSFLNKKPPKSLAQQGLEGSTAVGKDEVGSSNLPSSSKMC*
EM039_1102390	EM039_11023902	F081453	MSPFFLLAGENIIEKHISANPVCGTNIKAPEPAVKGAPGRKFV*
EM039_1104282	EM039_11042822	F029444	MEVSEQLTGFEPEDLMSWTVSNLXRPFREDFXLEKSGIIAEKESQIFGRRFVGFDGPKKAAPFFNF*