3300000280: Human fecal microbial communities from Cork, Ireland - EM221

Overview

Basic Information

• IMG/M Taxon OID: 3300000280
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045762 | Gp0054129 | Ga0010825
• Sample Name: Human fecal microbial communities from Cork, Ireland - EM221
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI), Macrogen
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 79804660
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Cork, Ireland
• Coordinates
  • Lat. (^o): 51.907
  • Long. (^o): -8.472
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055775	Metagenome	138	N
F062845	Metagenome	130	N
F067844	Metagenome	125	N
F081453	Metagenome	114	N
F099451	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
EM221_1002931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4582
EM221_1011301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	729
EM221_1012522	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	77402
EM221_1028216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1966
EM221_1034113	Not Available	40694

Sequences

Scaffold ID	Protein ID	Family	Sequence
EM221_1002931	EM221_10029316	F067844	MNTLAAETTSAWYLILNRKRQTLPIYISQLSSHLPRPLTMGTQQVSAGAAVITPQHRSYRVPQGSPQVFGGP*
EM221_1011301	EM221_10113011	F081453	LLAGENIIEKHISANPVCGTNIKAPEPAVKGTPGRKFM*
EM221_1012522	EM221_10125226	F099451	MEIKNVGQLRKIIENLSDDYEIEMRIRRKLTQEELKHCRYPYPYDTKYLTLEFDDIGVSSKVLCLGVTSND*
EM221_1028216	EM221_10282163	F062845	MKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNAIPPSSCA*
EM221_1034113	EM221_103411336	F055775	MAQIAQQDNLVIEVTTTAAALDSVTKEKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSGTVEAIALY*