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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029671 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133139 | Gp0283817 | Ga0245181 |
| Sample Name | Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37190R1 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Beijing Genomics Institute (BGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 156215130 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 11 |
| Associated Families | 11 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 1 |
| Not Available | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | United Kingdom: London | |||||||
| Coordinates | Lat. (o) | 51.5 | Long. (o) | -0.12 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F044555 | Metagenome / Metatranscriptome | 154 | N |
| F052660 | Metagenome | 142 | N |
| F055715 | Metagenome | 138 | N |
| F060985 | Metagenome / Metatranscriptome | 132 | N |
| F064817 | Metagenome | 128 | N |
| F067844 | Metagenome | 125 | N |
| F078693 | Metagenome | 116 | N |
| F080163 | Metagenome | 115 | N |
| F081453 | Metagenome | 114 | N |
| F088920 | Metagenome | 109 | Y |
| F105375 | Metagenome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0245181_100039 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 236868 | Open in IMG/M |
| Ga0245181_100040 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis | 229852 | Open in IMG/M |
| Ga0245181_100096 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 152058 | Open in IMG/M |
| Ga0245181_100267 | Not Available | 82688 | Open in IMG/M |
| Ga0245181_100726 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 36895 | Open in IMG/M |
| Ga0245181_100928 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 28900 | Open in IMG/M |
| Ga0245181_123484 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 671 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0245181_100039 | Ga0245181_100039176 | F088920 | LFVKWNPKNHHFIFLFLAFFSFVSANLHHYSAFGAGLILHLILHFSPKAAIFAPKRAILLLFVPTLFFGFRAVFPLQASSKISGQTSLYQPWLSPYCLFKD |
| Ga0245181_100040 | Ga0245181_100040106 | F081453 | MFPFFLLAGENIIEKHISANPVCGTNIKAPEPAVKVTPGRKFM |
| Ga0245181_100096 | Ga0245181_1000965 | F078693 | MVLAPVRGAERFFIKANCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGEVETEKS |
| Ga0245181_100267 | Ga0245181_10026719 | F060985 | MSNIDEKAKNNFTLEMRIFENYEKVKHEIIKVIDFLRHAETNLGMCRIFDNQNHEFWHSVIKPWFKPERFGITHLWFPERFSYIGYGEYHFIRGNRWMKTPIDKIDRENRIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD |
| Ga0245181_100267 | Ga0245181_10026721 | F080163 | MKTIKFLQESFETKERFQQEINIKYFYNQNTVESIDFCINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCDAKQFLESINDFDKILFVISTYMKTYFDFCKDYSKISLHVHLVQFDSTTSVLIQGFYNYTHRDLSFSNKLEYQVLDSENELLQEKLDLIREEICKLIRIDPNLEKQGHEDNYVFNLNIESDNQIGFFLQAIIINS |
| Ga0245181_100267 | Ga0245181_10026726 | F044555 | MKTTNPSSRITISQNGNQILTCKVYKEPKYILSMSNEEILELISGLDYMGNIPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR |
| Ga0245181_100267 | Ga0245181_10026733 | F105375 | MKNNETFQTTQHLNKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISSNIMQITFTV |
| Ga0245181_100267 | Ga0245181_10026735 | F064817 | MNIKNLFNRFCKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKISEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQENQYENETV |
| Ga0245181_100726 | Ga0245181_10072620 | F052660 | MCILRVLPEKTSERIGQERAGTEWTVVKSKIRLCIRNRSYGRFLHGGILMGIALPIPSHRAKSHDFAYWWPAAAGHSRSADALPGKSNS |
| Ga0245181_100928 | Ga0245181_10092824 | F055715 | LIKANEFDKINELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIRVGTAEILDN |
| Ga0245181_123484 | Ga0245181_1234841 | F067844 | MNTLAAETASAWYLILNRKLQTLPFYKAQLSSPLPRPLTMGTQQVSAGAAV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |