3300029513: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005377-43

Overview

Basic Information

• IMG/M Taxon OID: 3300029513
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283433 | Ga0244810
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005377-43
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 147285683
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051936	Metagenome	143	N
F076064	Metagenome	118	N
F081354	Metagenome	114	Y
F081453	Metagenome	114	N
F089005	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244810_100301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	62800
Ga0244810_101177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	17791
Ga0244810_102156	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	9988
Ga0244810_106586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	3205
Ga0244810_129464	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	653

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244810_100301	Ga0244810_1003015	F081354	LVRENQQSSAHNFVKDFSLIFLKFSRRSPLKKGAATENPLEYGKTEVQILFEPLQAAISSMELPKNFENKKLPNPLR
Ga0244810_101177	Ga0244810_10117720	F089005	LTKSKQRSIIVLALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSEMYTKKHH
Ga0244810_102156	Ga0244810_1021561	F051936	EQEGTGQVLFFPLALRGKAFGFSVLQEHAVMTPVIRISFSILIIRHL
Ga0244810_106586	Ga0244810_1065866	F081453	LPKEMSPFFLWIGENIVEKYISANPVCGTNIQPPEPAVKGAPGRKCIQ
Ga0244810_129464	Ga0244810_1294641	F076064	ALENLFYLQYDLPPEASFHATTEEAKRPDELYIRKLLPELTRLKLQPCHVVANDEAYYAAMKGISLFTPEAEKLMHRADYYSARRQIRLCAPDLKRRNEAKRPPKPALKFY