Sample 3300029536

Basic Information
IMG/M Taxon OID	3300029536 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133133 \| Gp0283541 \| Ga0244918
Sample Name	Human fecal microbial communities from Shanghai, China - P032V6
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300029536 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0133133 | Gp0283541 | Ga0244918

Sample Name

Human fecal microbial communities from Shanghai, China - P032V6

Sequencing Status

Permanent Draft

Sequencing Center

Beijing Genomics Institute (BGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	129791694
Sequencing Scaffolds	11
Novel Protein Genes	27
Associated Families	26

Dataset Contents

Total Genome Size

129791694

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Duplodnaviria → Heunggongvirae

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

Not Available

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5

Ecosystem Assignment (GOLD)
Name	Human Fecal Microbial Communities From Shanghai, China
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Ecosystem Assignment (GOLD)

Name

Human Fecal Microbial Communities From Shanghai, China

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Animal → Animal distal gut

Location Information
Location	China: Shanghai
Coordinates	Lat. (^o)	31.2112312	Long. (^o)	121.4647709	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

China: Shanghai

Coordinates

Lat. (^o)

31.2112312

Long. (^o)

121.4647709

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F042095	Metagenome	159	N
F044554	Metagenome	154	N
F044555	Metagenome / Metatranscriptome	154	N
F050794	Metagenome	145	N
F052660	Metagenome	142	N
F056682	Metagenome	137	Y
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F060985	Metagenome / Metatranscriptome	132	N
F064725	Metagenome	128	N
F064817	Metagenome	128	N
F071325	Metagenome	122	N
F075481	Metagenome	119	N
F076190	Metagenome	118	Y
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F081453	Metagenome	114	N
F088920	Metagenome	109	Y
F089590	Metagenome	109	N
F089591	Metagenome	109	N
F089592	Metagenome	109	N
F093883	Metagenome	106	N
F094005	Metagenome / Metatranscriptome	106	N
F101355	Metagenome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0244918_100056	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	162621	Open in IMG/M
Ga0244918_100067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	150000	Open in IMG/M
Ga0244918_100127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	106246	Open in IMG/M
Ga0244918_100177	Not Available	84528	Open in IMG/M
Ga0244918_100908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	21014	Open in IMG/M
Ga0244918_100981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	19438	Open in IMG/M
Ga0244918_101170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	16237	Open in IMG/M
Ga0244918_104989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	3969	Open in IMG/M
Ga0244918_107188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2777	Open in IMG/M
Ga0244918_109347	Not Available	2119	Open in IMG/M
Ga0244918_115037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1276	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244918_100056	Ga0244918_100056115	F064725	VIQLAREGRLDFFCINDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCVADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLVQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKFI
Ga0244918_100056	Ga0244918_100056127	F050794	MAPVGTLYIMQLDAFLHRKIMQDLRIQRVKVLMMLYTSNYFVKVRQKQLLDHTYSLSRDQAFDYMTEFNKRLSDKVGVKCTMDILLPTDDDNANIIIEHNGIIKKLMKEAEKLELDTDAIEAMMRDLLDELKDDIDLNILIFDVSQLLIKYNLFRLDAITEQEFKNSFVRMDSRNMEIKKLTLSDIKKVVEMIEDRYSYALYMTEEYG
Ga0244918_100056	Ga0244918_100056204	F078005	MVKTGDDGFEYGGKVIFYKEDDDDYEILVKNIEMNLMVEANTMASMDDRTFACLMGEVYKQKFTKAVTISEDEDDEDN
Ga0244918_100056	Ga0244918_10005625	F078006	MDNVLKRAAAELKEAGCRVFAWQDDTYNRSWSKGDYIMLYYAFPDSPNIGYLSRGEYGMSVAYSRAYIPSCGSGSGCCVKEEATFDPEAALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI
Ga0244918_100056	Ga0244918_10005631	F080673	MDEIELLRLQDEALSYLRDNITKDEAYYILTTDKDMIEILIANKKDGSKRIKILDMEYTIEKDDMLLLFDTDGIIDECLLVASYIGVNMYFRRQDVNAILNNINREKVMKYPYIAIQLDNIQTIEKRRVIFEITGHRVDYDKVDFMFVYFMARIL
Ga0244918_100056	Ga0244918_10005638	F057001	MTNKELNKVQNEVKKASEKTLTGAVKAWCQLFKSSKEVNEILKDNDIKVDRAIVPALAALAKDKEIVIQLCKEILPRVNNTFCAYKEIEREYYDKNDQDKNKKLKMSEIEDIAILGSSHKRFGYNEPIEYDFGIYYETFNGTDKRIVKCAVPIKRYTFSLIAKCVTYYLTHPKNDR
Ga0244918_100056	Ga0244918_10005666	F058555	METKVALLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVTAYLSIINVQKHVFLRNRMRDGYRDRIEINTDDFIDILSDGIAYFCYRHVIENCHEDIDYQLKTLKAYAEGEIRIALSDIMIYSYKAKKNEDTKEIFVGKKRSVYKCLDKNLSSNERRNMANKSRKFDRVRILSKIIFRARTRNVHHIYKVTKRKTIKFNVAYLLNELNKKLAGIGMHEISQSTIYRYISMFLGMCKKSISDLYDEVKKNNGIANAKDRKNVTIGHLRLSYRGKIMHIIIAEDFIKDVFLGVKGSEMSKAG
Ga0244918_100056	Ga0244918_10005671	F093883	MEEDKDIKKEIRDYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELENMFHDMSVTEVSKIGVVQSYELLMKQYNEFKDMKANATGKTKAD
Ga0244918_100056	Ga0244918_10005677	F089592	MKEILKSKKVLVEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSKAYNTGFYPRSRCYNGMDKDEVDRLVNQRVNNIMKPFEDISQKDLSQTNLEFWDDAKDKIFMGKVYNTANTVELFYLYLAVFSGMLTPQEMDGDPIFMNSMFCFIEKDNAKDFVQQREINKMNISYKFINALKKGDKERQAVIDLLLYIGIVTRPDFTEDDYYTGSLSNWMNEKKTNIDYLLDIWDRSLEGDFKEVLEFYRIINVLQRNGRINMTPSGLQYNGQIIGPDTRTSAEFLATKKDLISVKANVLDEYEELMSISNIDDKTKKVKDVKKKEDVGEGDKVNTEE
Ga0244918_100056	Ga0244918_10005678	F089591	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLIRYYLNRKDDETIRSIQTLLVYWKSLKEVSHIDDPESTSFGLPDDYLWFSNIKGAFSYKGCEVGDFVMWEANNENVHELLGDDNNRPSFDYRETFYTIGDGKVVVYEDGFRTDEVRMTYYRNPVRVDLAGYINAAGERSTDIDPELPDPLVEEILDMVAKQFNLNENELQRYRFDKDNVASFK
Ga0244918_100056	Ga0244918_10005685	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGRDNYCIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDIPGLEFLIVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRNIESSGIRNIKNMKNLQTLDLSSCYLDRYIKEFNDLPKLTSLKIHPGPSDMWNYFDINTLPFFEVDKINPNITDFYFLDDWVSGERRTGWNDDNMSGRGLEHLTSFIAVHSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYAAACPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWMIKPE
Ga0244918_100056	Ga0244918_10005688	F089590	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFSDAYLVKVFKAVFKRINVFKMFGFSKNIPDEMFDDIKKIADDKVKDKS
Ga0244918_100056	Ga0244918_10005689	F075481	MIRLRISLKAVFCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKEVDPSTGERPVSSQTDAHIVIGRRDSTVTVDSLGIDKTITGVKDIDKKTDIEHKDVDDKKESRWPIVWIVAGILMILLVLVYILKKIKIL
Ga0244918_100067	Ga0244918_100067107	F081453	MFPSFLLAGENIIEKHISANPVCGTNIKAPEPAVKGAPGRKFV
Ga0244918_100127	Ga0244918_1001271	F071325	VYRDFPSRLRFHKFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSLPNAFLKAFLPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0244918_100177	Ga0244918_10017741	F094005	MKKETVKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE
Ga0244918_100177	Ga0244918_10017742	F032312	MARIKDYDEDLSAPKILKRRDNKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0244918_100177	Ga0244918_10017743	F060985	MSNIDEKAKNNFTIEMRIFENYEKVRHEIIKAIDFLRHSETPMGMCKIFDNQNHEFWHSVIKPWFQPERFGITHLWFPSRFSFIGYGEYHTIRGNRWLKTPIDKIDKEDRIFGYWFPPYKKYIPYRIKVLKLALKDLERIKEG
Ga0244918_100177	Ga0244918_10017746	F044555	MKTTNPSSRITISQNGNQILSCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLGKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0244918_100177	Ga0244918_10017758	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
Ga0244918_100908	Ga0244918_10090813	F101355	MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKGAGAVFPYVLPRCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDYFYKKLLAYVLFFFFKIYLKKIDFFQNIA
Ga0244918_100981	Ga0244918_1009817	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLCFSFPFSFRANFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
Ga0244918_101170	Ga0244918_1011701	F052660	QERAGTEWTVVKSKIRLCIRNRSYGRFFYGGILMGIVLPIPSHRAKSHDFAHWWPAAAGHSRSADALPGKSNF
Ga0244918_104989	Ga0244918_1049893	F056682	MKMQSRAEKVANQPIGQDKMYPASFGTFPLKNRSTFPIQELRKNREKQEVL
Ga0244918_107188	Ga0244918_1071885	F076190	VRTVGVSITISAKNVFMAASRVSGRVWSLVRITIPNGLKYVKIGVEKPQNNSLYPYFQREPL
Ga0244918_109347	Ga0244918_1093471	F088920	SFRVLLVCKVKPRKTTTSFFCFLHFFSFVSARPHYYLAFGAGLILHLILHFSQKAAIFAPKRAILLIFVPTLFFACLAAFSLHTSPKISGQTSLYQPWLSPYCLFKD
Ga0244918_115037	Ga0244918_1150371	F052660	PEKTSERIGQERAGTEWTVVKSKIRLCIRNRSYGRFLHGGILMGIALPIPAHRAKSHDFACWWPAAADHSRSADALPGKSNF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029536: Human fecal microbial communities from Shanghai, China - P032V6

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences