3300029415: Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-6_Run5

Overview

Basic Information

• IMG/M Taxon OID: 3300029415
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133112 | Gp0282520 | Ga0243378
• Sample Name: Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-6_Run5
• Sequencing Status: Permanent Draft
• Sequencing Center: Zhejiang University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 161769457
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Hangzhou
• Coordinates
  • Lat. (^o): 30.0
  • Long. (^o): 120.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F081453	Metagenome	114	N
F082887	Metagenome / Metatranscriptome	113	Y
F089005	Metagenome	109	N
F090514	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243378_1001630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	13257
Ga0243378_1001676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	12826
Ga0243378_1005638	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2901
Ga0243378_1009522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1820
Ga0243378_1036244	Not Available	630

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243378_1001630	Ga0243378_100163012	F089005	LTKSKQRSIIALALLRLATSNEESKQALKVRRTLKIEQRDNSKETRNDFEESSKNYSEMYTKKHQK
Ga0243378_1001676	Ga0243378_100167612	F026489	SASDFDALEPRKRGCSPLLTPKRRAAPEKTEDSRLFGVKIF
Ga0243378_1005638	Ga0243378_10056381	F081453	MSPFFLWIGENIIEKYISANPVYVTNIKAPEFAVKG
Ga0243378_1009522	Ga0243378_10095223	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADIPPRLTGAKWFVILLTIVPAGSRTRAGSSLPLIPASNIFLKQTPRRGLPLAWNAGAGSFLFCD
Ga0243378_1036244	Ga0243378_10362442	F082887	MEKLKKIAKYTTNILAIISALIAGINAVDGITIPYAIQIVQIIAVIQGVIGTYLLGQKVVTNKEDK