3300007312: Human stool microbial communities from NIH, USA - visit 1, subject 159247771 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007312
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052725 | Ga0104941
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 159247771 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 103087913
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F055715	Metagenome	138	N
F081453	Metagenome	114	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0104941_109932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1445
Ga0104941_112139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1174
Ga0104941_115954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	882

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0104941_109932	Ga0104941_1099323	F029444	MEVSEQLTGFALEDLMSWTVSNLQCPFREDFSLQKSGIIAERESQIFGCRFVGFDGPKKRSPFSISKRRWSI*
Ga0104941_112139	Ga0104941_1121393	F081453	MSPFFLLAGENIIEKHISANPVYVTNIKAPELAVKGAPGRKCIQ*
Ga0104941_115954	Ga0104941_1159542	F055715	LTKANEFDKINELLIERTAKKFEKASKNKLKKFLTNEKFCDKINELIRVGTAKILDN*