Basic Information | |
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IMG/M Taxon OID | 3300008725 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063646 | Gp0053330 | Ga0115670 |
Sample Name | Human stool microbial communities from NIH, USA - visit 1, subject 763678604 reassembly |
Sequencing Status | Permanent Draft |
Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 211787256 |
Sequencing Scaffolds | 25 |
Novel Protein Genes | 26 |
Associated Families | 26 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 11 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp. 4_8_47FAA | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 3 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes | 1 |
Not Available | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
Location Information | ||||||||
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Location | National Institutes of Health, USA | |||||||
Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F026489 | Metagenome | 197 | N |
F026592 | Metagenome / Metatranscriptome | 197 | Y |
F029444 | Metagenome | 188 | Y |
F032286 | Metagenome / Metatranscriptome | 180 | Y |
F039147 | Metagenome | 164 | N |
F043945 | Metagenome | 155 | N |
F051935 | Metagenome | 143 | N |
F055715 | Metagenome | 138 | N |
F055775 | Metagenome | 138 | N |
F057385 | Metagenome | 136 | N |
F058154 | Metagenome | 135 | N |
F066905 | Metagenome | 126 | Y |
F068811 | Metagenome | 124 | N |
F073574 | Metagenome | 120 | N |
F074898 | Metagenome | 119 | N |
F075480 | Metagenome | 119 | N |
F076190 | Metagenome | 118 | Y |
F077320 | Metagenome | 117 | N |
F078004 | Metagenome | 117 | N |
F081453 | Metagenome | 114 | N |
F088914 | Metagenome | 109 | N |
F092227 | Metagenome | 107 | N |
F097493 | Metagenome | 104 | Y |
F099269 | Metagenome | 103 | N |
F100397 | Metagenome | 102 | N |
F105374 | Metagenome | 100 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0115670_1001486 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 20958 | Open in IMG/M |
Ga0115670_1003427 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium | 9368 | Open in IMG/M |
Ga0115670_1003477 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 9261 | Open in IMG/M |
Ga0115670_1003814 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae | 8478 | Open in IMG/M |
Ga0115670_1003966 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 8102 | Open in IMG/M |
Ga0115670_1004028 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium | 7969 | Open in IMG/M |
Ga0115670_1004406 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 7292 | Open in IMG/M |
Ga0115670_1005092 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 6314 | Open in IMG/M |
Ga0115670_1005106 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 6300 | Open in IMG/M |
Ga0115670_1005575 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 5746 | Open in IMG/M |
Ga0115670_1006340 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 4997 | Open in IMG/M |
Ga0115670_1006883 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 4612 | Open in IMG/M |
Ga0115670_1010217 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 3046 | Open in IMG/M |
Ga0115670_1012715 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp. 4_8_47FAA | 2419 | Open in IMG/M |
Ga0115670_1013422 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 2289 | Open in IMG/M |
Ga0115670_1013875 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 2218 | Open in IMG/M |
Ga0115670_1015795 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1938 | Open in IMG/M |
Ga0115670_1016802 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1821 | Open in IMG/M |
Ga0115670_1022390 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 1353 | Open in IMG/M |
Ga0115670_1023527 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes | 1284 | Open in IMG/M |
Ga0115670_1026520 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 1137 | Open in IMG/M |
Ga0115670_1028226 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 1066 | Open in IMG/M |
Ga0115670_1041668 | Not Available | 713 | Open in IMG/M |
Ga0115670_1042436 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 699 | Open in IMG/M |
Ga0115670_1054581 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 529 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0115670_1001486 | Ga0115670_10014866 | F097493 | MKNGTAQFYEHGVEIDGTVYGIHTDRDTLRIKRSVVNDKFAETDGDFDMDTEIAKIKHTDITFEQPTAEQLEQIQAKTYNSMTELKQHVQSVMNGDETMSQDEINAMLMLQIAELKAGVGGE* |
Ga0115670_1001591 | Ga0115670_10015911 | F078004 | KIIRFQAIFKDTVEFTCALEFKISSQHNITFFQITVFYVPAVSRRIRSLALLSAVSEHLSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDVHMLRHTLIITIINALYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF* |
Ga0115670_1003427 | Ga0115670_10034274 | F075480 | MNKTKQEKWQRAYGDTPDSFRQRVASALPKGEESRHVAFPRRAMVLAAALVLVLTTAYAAVVTQTELVWNAGHPIENEADDRLGLLTGKAGTSGDSLTIGGVTFTVQDGIYSPETGQLFASAVISADESVQLVGVESDMEWEVRAVTPVSEKLDPSGISWAEWAEQNGKTLVPIGMEAAPTLQFLKVNGQTTDTPLIGAFLTQNPDGTVSAGFQVDLTEADTSHLKSCEVQLECRVGAFGKDGKATQWQKEILIATITFK* |
Ga0115670_1003477 | Ga0115670_10034778 | F058154 | MKNRTFQRLFPLLRMGSILLAAVLFCAALIGVNAQLTVGTNEERNLATYLGLALTAVVTYLLQDVPKMLVGRHFGWKLVRYEAFGRVYQADGTGAFVRVPVPAQRRLRYQPYLLPPEDASRHDVTLYTLCPLLYGGALAVVFGVLTLLTLGQPVSLVLCELAMGGVVLVMTCILPMDERFIASPMAIARMLRDPEQLAEWLYFARMKANGGVEVTDVSIENIPQPATVKTCQDAICVFQRAQIALMVQCDAQKAYGLMKQVLESEARLSYTAWKLLLSDGVVAELLAGEPGEFTALYRGKAGTAIRQVMFRMVDYALPAYAVATLVTHEAREAEVVRNTLAPVREKMPELDALMKAIEEKAPPTPKPDP |
Ga0115670_1003814 | Ga0115670_10038142 | F055775 | MAQIAQQDNLVIEVTTAAALDGATKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIHIINANSGAVAAIALN* |
Ga0115670_1003966 | Ga0115670_10039667 | F029444 | MEVSEQLTGFELEDLMSWTAFNLQRPFREDFSLKKSGIIAEKESQKFGRRFVGFDRPKKAAPFFNF* |
Ga0115670_1004028 | Ga0115670_10040281 | F074898 | VSRPESGKDKKKTKKQCGTWNLSFSLTKRTKCCILYVAKAFVLYRKECFFMRKILSLLLILALFLPCALAETPQGIDLALTSTYGDGLSLRMTAGLGETPFCSLTLPSGQIDLAFSPDKELCVQSGGQWAQLLVEGHPVDAALLTTPLKLLDGRSPSEVLGLLAEDVNKMLDAIPSLYNLPMTLIRDPAFARLFSDLYIAAQTGTISITSEELNRLAASVLGKIYSMEYLDGLNFSDIYHNLLASVVQTSEVARAYRSAMRGYLLSNFRLSGQIGIEKGELLFRQPYQEPYHLTYEQTTPNSWHYLLTTANSDTIDGVLYWRNEYDFALSGYSENQHTAFSVTCSYGSANNFVFIASVDNSFSLSIVQAGSNFSLRLNNENANVFALNANVFSLESTSDYIRVKIYYNYYTLTITPATDGLDIVAQAGTFDIFTAHVRTALNGLICTGVYGDTTYRLALTETATGFSLLLSLPDGDFHLDFAALSDTSCSLTFTDAAGQQVSLTGSLCTPESPVIPDTLGTIELTQLLDGLF* |
Ga0115670_1004406 | Ga0115670_10044065 | F039147 | MERKRIAMRARRLLILLMMLLLLPRAQAERLTLYTRPGQVDEATPFQLRPTELSICSVTRAMGGVVVLANDDNYDSLSLYFWQDGMTEMRKLGGGFYWVMSSDTMETAQESCEYAMSRVPNYRMPDLTHAISELTSDGETLYALNRINGLIFKISETKDGLQTEDVCTMANLSCLNVSYRDLETDKVYTYPASLTRMHVCGSVLAISVMQENGIKVVLVDLADGAIREIADESLEAMYEWADGELLLWRLEGSPNEISRSSGTYTLSRYSVATGEETLLSTGVPYKKRSECGAYDPYSGSYYDVRTRQIVRTTDFVQEDPVVTFPAANVNIAVTKDSIVGVNLSSVYVRSKENGDMTVLRIQSSNGASNTALQHFAEENPEVILAQETLAKSAMNAASLAARMSASADAPDILRLGLTPDTPEADGSWPLDVLMDKGWCMDLSVYPEVSDYVSRLNGIYRDAVTRDGKIYAMPIYAWSYGYFISRNVMEKLGLQESDIPTNLIDLCAFITKWNDNLTGAYAAYTPLEETESYRERVFDLMVRDWIGYCQAENIPLRFDHPVFREMMAALDAMRTDKIEQANQQVNEEISDYRECLIWTDAQAVGNFANYADAFGSRIFLPMALTPDVTTHYGIGYMTVLVVNPRTTNADLVGKLLAQVIADQEATAKCVLLADYDEPIEDSYYLIMVNDYEKTLTELRRQQENAPVWKKQGIQERINEEEASLQRYTVRERWTIAPKTIELYQQTILPMSYLRRPGILADSDAFSALVSQVHQGEISLEEFVEEADKLIEGLEQ* |
Ga0115670_1005092 | Ga0115670_10050927 | F051935 | MKEEKRMKRLLGLLMAVMVMMGGISCAVAENTNPIVSDWLTELKSKRLIQIVEDEIGEGWTLYQPNGREEEENFSSAANLKEMRFLPVVAQKDNQLRLLILRKQGDLWKVSEQNDRALMRDGWTLQNFSAMPYGNSDWTYIYFDFVDENQKRWNLMLNLGDGYVSSFGTISHYVEGYGTTYINMNYDRGLEFLIDAPAYSRLSYEVYPVEDYSFGVEDFDLATCPLSMQEFLVSAIVTCGEEGAGLYIMVQQDVQPIVTLADGDAIEAIPQKWELDWTIVYYQGNYLFMKTENCKMEE* |
Ga0115670_1005106 | Ga0115670_10051064 | F032286 | MVKWVCQIVTPVRHRALVFDARLFAGNAADDTLVTGGTFRFCRLICLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISPFSLALISTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYG* |
Ga0115670_1005575 | Ga0115670_10055754 | F057385 | MKKLLAVLLSIMMLAMPLTSMAENSVWDNAARQETTITIHDLNADLVAALGGDDTTMAAINDLLAALSLTGYQQGDEAGFDLNLSGKSVLGMASLTTAAEENQLMYVSSALLGGVIAVNSKDVEAIKEKALRATMKMSGQSDEEIDKAIEESKEQLSGNAEYTALMEASANLSSMTEEQLMEELTQADTTAFMTMMNEILSGAEMAEVTEQPGDCDAAKNYVKVTVPPEKLAEMTKALLEMIHSVPSIGAYMDAFFSAADTSWDDLLKELDEADLYADDIVYEYWMTEAGELVRMTASVKINNGGEEPLPMSFTATRNTADGVATWLVTIKSAEDTAATLTFAGDLENFTANLTAYAGEDSVEINVSGKGIGTDSSVVDVEIKETVDGVEQGFGVVVTTATTMDGEQGVRKVDVLVRFMGLDVVTITAETRTCDAKDALDVSKAQDLGAMTDSEFQTWFVKVMNNLQNLPMTLLMSLPESMLTLLMGGSN* |
Ga0115670_1006340 | Ga0115670_10063405 | F043945 | MAFLSLLLVLTLGVMPVFAESADHAMDWTHGIGSRPPTGADSARPLAGELFFISGSQLLRVDDPEYEPEVVCNLEDIIWSEALKQSGYYGQVMLLSGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVTELNYSTVPQMGWKKFPIAKDLYDVTVEQAVYDAQYGLYVIAKDKTDEYQIVWFDLDTGKGEMLEFALEDDENSHLLTDMPGIFQWSGTSSKYERTLYDGKVLTTVDLSSGEATKAVHNWVNTLTLQPIPDYDVTLGDYVTHDAYYAYAPNKDNSAMYFVHDNTVWVMEYDEENSQFSEPRGIDKLPFFAEDTMCGF* |
Ga0115670_1006883 | Ga0115670_10068834 | F088914 | VGRILPVCNGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGKFIVFSAWYAAKALEMDVK* |
Ga0115670_1010217 | Ga0115670_10102171 | F026592 | ASPQGIDAQASQGSVAPLMERSDETFSGMQLFSADRE* |
Ga0115670_1012715 | Ga0115670_10127154 | F099269 | VGELLLLDDLGDRASGASVLAGATSDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV* |
Ga0115670_1013422 | Ga0115670_10134223 | F081453 | MFPFFLLAGENIIEKHISANPVCGINIKAPKPTVKGAPGRKCIQ* |
Ga0115670_1013875 | Ga0115670_10138752 | F073574 | VDDTASRVRCAIVLNGSKELHIQLCGRLKRGLFGRNQLLADGDVLCVALHQPDGDVPLFYSRCDGYANVLDDRQPPAPIPLHPAICPKCRNAAFQLRLTFEYPEAEELAAFANPDDMFTWVWVTMRCTRCHAVFRGDFAAD* |
Ga0115670_1015795 | Ga0115670_10157952 | F077320 | MKRKGMRRRRKLVLLAVLLIMVSIAVWRIWQTPRPVVLHRQDAWLSSAEPEMVDTLPDNAFTAELPEEIDGLLLYIRDYSASGHYQIVWENVSAEAAESYLTALLDKGFTRLMGTAEDIASGVLLARGDLTLSISLSGGTLNMLMTRAEESTPTPLPEWLADW* |
Ga0115670_1016802 | Ga0115670_10168023 | F076190 | GSITIFVKNVFTAASRVLGRVWSLVRITIPNGLKYVKIGVEKPQNNSLYPYFQREPL* |
Ga0115670_1022390 | Ga0115670_10223903 | F026489 | VAKENQKTTSDFDALEPRKRGCSPLLTPKKWAAPKKTEDSRLFGV |
Ga0115670_1023527 | Ga0115670_10235272 | F105374 | DGDTPELCRPAPLPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVVRSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP* |
Ga0115670_1026520 | Ga0115670_10265202 | F068811 | MDKMDQDGSEHNICSNREGLCPGKEQHGASGWKKIFRHGKEPLRNKDSASQYCNKKAAVLLILNENVSETLCIFSIDKTNCCRI* |
Ga0115670_1028226 | Ga0115670_10282262 | F055715 | LTKANEFDKINELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIRVGTAEILDN* |
Ga0115670_1041668 | Ga0115670_10416682 | F100397 | MKKLIAILVLSLSLILCLTACGSKMPYDLSETASVELHAYNNDSTEPFAKIVVDGEDVATIVEMFNSLKLKEMKYTEPSIRGYEFWFRDENGSEIVKIELPYGPSPWLVVGGTEYPYQDVNGGVDVDYLAQLVDMTISAGPMQPEDGVDHNAP |
Ga0115670_1042436 | Ga0115670_10424362 | F092227 | MNEQKRKRILRVGCLILAGVFLLSVLGSVILMLLV* |
Ga0115670_1054581 | Ga0115670_10545812 | F066905 | QDEVRDCSCCNNCNQGGLFGNLFGGCNNDSTILFFIIIFLLLFTNFGCGCGR* |
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