3300006298: Human stool microbial communities from NIH, USA - visit 1, subject 737052003

Overview

Basic Information

• IMG/M Taxon OID: 3300006298
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052470 | Ga0099618
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 737052003
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 85053889
• Sequencing Scaffolds: 19
• Novel Protein Genes: 20
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	5
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Pseudoflavonifractor → unclassified Pseudoflavonifractor → Pseudoflavonifractor sp. 60	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F044554	Metagenome	154	N
F047126	Metagenome	150	N
F056682	Metagenome	137	Y
F059106	Metagenome	134	N
F062845	Metagenome	130	N
F067844	Metagenome	125	N
F071325	Metagenome	122	N
F076189	Metagenome	118	N
F081453	Metagenome	114	N
F087335	Metagenome	110	N
F087336	Metagenome	110	N
F089053	Metagenome	109	Y
F090513	Metagenome	108	N
F090514	Metagenome	108	N
F092227	Metagenome	107	N
F092228	Metagenome	107	N
F101355	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0099618_100018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	250532
Ga0099618_100036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	166481
Ga0099618_100180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	58337
Ga0099618_100406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	31648
Ga0099618_100426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	29908
Ga0099618_100640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	19525
Ga0099618_100836	All Organisms → cellular organisms → Bacteria	15513
Ga0099618_101066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	12605
Ga0099618_101091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	12330
Ga0099618_101102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	12193
Ga0099618_101417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	9635
Ga0099618_101713	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	7931
Ga0099618_102345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	5753
Ga0099618_105207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	2347
Ga0099618_106498	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1805
Ga0099618_107127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1609
Ga0099618_107773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	1439
Ga0099618_112022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Pseudoflavonifractor → unclassified Pseudoflavonifractor → Pseudoflavonifractor sp. 60	849
Ga0099618_117562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	530

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0099618_100018	Ga0099618_100018223	F092228	MKKKCTLVLISVLTVACVVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKTIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCQDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIILKTVESPYNGIWKLEVGSNKPVKIADRCDCDELLATKNFLYCYTINYILPRGMANSWVKGYLIDQLAIS*
Ga0099618_100036	Ga0099618_10003625	F081453	MFPFFLLAGENIIEKHISANPVCGTNIKAPEPAVKGTPGRKFM*
Ga0099618_100036	Ga0099618_10003663	F081453	MSPFFLLAGDNIIEKHISANPVCGTNIRAPELAVKGAPGRKCIQ*
Ga0099618_100180	Ga0099618_10018019	F087336	VAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQIQVAFLEIAF*
Ga0099618_100406	Ga0099618_1004066	F090514	MNLRIHALKKASRQRPGVKTAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADILPRLTGAKWFVILLTIVPAGSRARAGSSLPLIPASIFF*
Ga0099618_100426	Ga0099618_1004264	F101355	MAFWFIQWYLPSAQPPQPKGAGAVFPYVLPLCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA*
Ga0099618_100640	Ga0099618_10064016	F047126	VYLKTKKMTNISQTQAGFKLKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESSCILCSLLRYFHILSKKLQKTC*
Ga0099618_100836	Ga0099618_1008367	F042936	MGRGGGKGRVWKTKEGIMKTSGIVDRGEGTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG*
Ga0099618_101066	Ga0099618_1010665	F092227	MNEEKRKRFLRVGCLLLAGVFLLSVLGSVVLMLLV*
Ga0099618_101091	Ga0099618_10109111	F090513	MLKIFAIAKYVRKMEWKLLHIKHILYMRPFGALKIVPQSVGNKNGTKAVLQGWAAAFVPYMLSFTYGNTA*
Ga0099618_101102	Ga0099618_1011023	F044554	VLAGQFIPVLCASIARLFPCRTEIARCLTLDFSISRYLFLSFSFSFRTNFAQALFSSLLFASDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL*
Ga0099618_101417	Ga0099618_1014171	F071325	FKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLDFEELLSCATAYL*
Ga0099618_101713	Ga0099618_1017133	F062845	MEKTPFILHEEFRSDNNEQRKEHFQKKFERYIVDELSNAAPSKSCA*
Ga0099618_102345	Ga0099618_1023453	F092227	MNEQKRKRVLRIGCLVLAGVFVLSLLGSILMMLLL*
Ga0099618_105207	Ga0099618_1052073	F087335	MIELYFNDANLLPENREEEQYAEAVLNNILAGKTADTEMCILPCFYDAPLHKGLLYHLNDGTTLRIRPVLSEAGEPELLIRCVTEESVETVYQRVANYD*
Ga0099618_106498	Ga0099618_1064981	F067844	MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSVGAAVITPQHRSYRVPQGSPQVFGGP*
Ga0099618_107127	Ga0099618_1071272	F059106	MHAIVWKIRVILLQTFVWIVDLKVREHLTGYLKKDIKYHRVTTGVHV*
Ga0099618_107773	Ga0099618_1077732	F056682	MKTQSRAGKAANQPIRQGEIYSASFGAFPSKNRSTFPIQKLGKIHENQEVL*
Ga0099618_112022	Ga0099618_1120222	F076189	VLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDSHAIQSAQKQLRMLCNFHENTFWLLIFY
Ga0099618_117562	Ga0099618_1175622	F089053	VNKMEGPRPDKFAFGVRIGRVVDECRPVKGCIRKWLYIFANGRLKLSTAEEVNVKSMEVSL*