3300029098: Human fecal microbial communities from infant at 12 months in Denmark - 10_12M

Overview

Basic Information

• IMG/M Taxon OID: 3300029098
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193480 | Ga0169171
• Sample Name: Human fecal microbial communities from infant at 12 months in Denmark - 10_12M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 108179585
• Sequencing Scaffolds: 21
• Novel Protein Genes: 23
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
Not Available	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.676097
  • Long. (^o): 12.568337
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F044554	Metagenome	154	N
F050794	Metagenome	145	N
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F064725	Metagenome	128	N
F071325	Metagenome	122	N
F076189	Metagenome	118	N
F076653	Metagenome	118	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F081453	Metagenome	114	N
F083452	Metagenome	113	N
F085718	Metagenome	111	N
F088914	Metagenome	109	N
F089053	Metagenome	109	Y
F089591	Metagenome	109	N
F092228	Metagenome	107	N
F093883	Metagenome	106	N
F098313	Metagenome	104	N
F102167	Metagenome	102	N
F106193	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169171_100058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	166589
Ga0169171_100470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	43059
Ga0169171_101152	Not Available	14543
Ga0169171_101483	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	10514
Ga0169171_101507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	10312
Ga0169171_101838	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	7994
Ga0169171_102212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	6295
Ga0169171_102301	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	5985
Ga0169171_102474	Not Available	5542
Ga0169171_102497	Not Available	5480
Ga0169171_102822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	4815
Ga0169171_102970	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	4554
Ga0169171_103269	Not Available	4078
Ga0169171_103629	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	3665
Ga0169171_103977	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	3330
Ga0169171_104035	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	3280
Ga0169171_104676	All Organisms → cellular organisms → Bacteria	2797
Ga0169171_105709	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2235
Ga0169171_107197	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1753
Ga0169171_114314	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	796
Ga0169171_115192	Not Available	740

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169171_100058	Ga0169171_10005860	F081453	MSPFFLLAGDNIIEKHISANPVYVTNIKAPELAVKGAPGRKCVQ
Ga0169171_100470	Ga0169171_10047032	F092228	MKKKCTLVLISVLTVACIVFAYLLFFYNPSFNMVFDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKDSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVVKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIIRKTVENPYNGIWKLEVGSNKPVRITDKCDCDELLATKNFLYCYTINYILPRGVANSWVKGYLIDQLAIS
Ga0169171_101152	Ga0169171_1011521	F089591	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLIRYYLNRKDDETIRSIQTLLVYWKSLNKINHIDDPESTSFGLPDDYLWFSNIKGAFSYNGCEVGDFVMWEAKNENVHELLGDDNNKPSFDYRETFYTIGDGKVVVYEDGFLTDEVRMTYYRNPVRVDLAGYINSAGERSTDIDPELPDSLVEEILDMVAKQFNLNENELFRYRMDKDNVASFK
Ga0169171_101152	Ga0169171_1011529	F093883	MEEDKDIKKEIRDYLKEEADTHIRHWMAIKRESKRLYSEIEDRTKKIALKSSSLIKEEDFVSLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDFDTTYASTAKSIMEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKEMKANATGKTKAD
Ga0169171_101483	Ga0169171_1014834	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNFYNDDYNYVPDPVVNNPFNTYVEFRSRKPGMANVDWGDGIKEQFPMTKVQGEDNYRIIFRSLAIQHKKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQTCKMTSFPIVDIPGLEFLVXXXXTMYANDGIPVDKLSRSKKLIYIDLSNVGQRMTEMPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLSITQGPSDMWNYFDINTLPFFEVDKINPNITYFIFLDDWKNGERRTGWNDDNMSGRGLDHITDFRASHSNGIRVDKLPDYIYEMRSITRFGMNCSTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYGLSVSMYNSTFPDENQRPTGQEQAPEGFVKGQSNGSPATPMEKIYVLKNNYAQKWTIKPA
Ga0169171_101507	Ga0169171_1015071	F071325	FKVLLALLLDSSIIISKVVLFVKHFFDIFLSLPSAFLKAFLPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0169171_101838	Ga0169171_1018388	F078005	MKKSKFVKELEKIIDMVKAEDDAFEYGGKIIFYKEDDDNYEISVKNIEMDLTVEANTMASMDDRTFVCLMSEVYKQKFTKAITISEDEDDEDN
Ga0169171_102212	Ga0169171_1022123	F076189	MRINHFKIMQCPAGCVICRALFFYFLSPFIKPLLYVEKLQIGTVLPVVPDLYREFSEILACFDLCAIQSAQKQLHMLCNFHENTLGLLIFYTNYAII
Ga0169171_102301	Ga0169171_1023017	F106193	VGCNTCKEKALRAERERIERSMMNHSSSTAVSDMEYASISTAGCMVMQDPLQTMERDVVSIYKQVRTKGDGVGVSYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILNGRAEHIKP
Ga0169171_102474	Ga0169171_1024742	F050794	MQDLRIQRVKVLMMLYTSNYFVKVRQKQLLDHTYALSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEHNGIIKKLMKEADKLELDTDAIKVMMRDLLDELKDDIDLNFLIFDVSQLLIKYNLFRLEAITEQEFKNSFVRMDSXXXXXRN
Ga0169171_102497	Ga0169171_1024979	F064725	MTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTNNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVGRTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLMQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYGRMWPNAFDKYIKLI
Ga0169171_102822	Ga0169171_1028224	F088914	VGRILPVCSGFFVFWSRKKGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGKFIVFSAWYAAKALEMDVK
Ga0169171_102970	Ga0169171_1029701	F058555	MTGTKIALLQKMKSNFDKILTEKYIPRNIQTKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSLKHEEYHGSGIRISDECKMAMIYLIIINVLKHVFLRKRMQDGYRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDINYQLISLKAWAEGEIRIALSDIIKYKHKASKVPRIKDMFVKKGESIYTCIDKNLDSDSRRRMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKKLIGIGMREISQSTIYRYISMFLDMCKKSISDLYDEVKKNNGVVNTKDRKNVTIGCLRLLYKGKYMHILISTEYIRDVFLGEKSSEMSKAG
Ga0169171_103269	Ga0169171_1032697	F098313	MIITVGLDYKTLCDRFENMEPEHEGKWGDEDDMDKEASFVNLVRDRDNDDQFAILWNFSSDDDIMMRNICHESFHIAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGHCVGEFINSKNTD
Ga0169171_103629	Ga0169171_1036292	F102167	MDINQIKTYLPSGWDVVDLIDHGIIDLDIMNGKMIGEYVAVLMIKSYDRITESHNLTSFSFHDKDMVGLRRLVSNAIMAVGLRNNTLKGDGNTAIK
Ga0169171_103977	Ga0169171_10397710	F078006	EAGCRVFAWKDDTYNRGWSKGDYIMLYYAFPDSPNIGYLSHGEYGMNVAYSRAYIPSCGSGSGCCVKEEATFDLETALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI
Ga0169171_103977	Ga0169171_1039778	F085718	MVIEFDFEIYKNGDYDKVYLRNGKEARVLCDNGKGNSPMVVMIENDKADDYVILRYNETGRRNINGQSGLDLMLSVKEWEPELWVVVISYMDNKDKRQKMVLPNFFSRNIGGYIYLQGSSKSNVSYYVGRLEGDGCFDELCEKIRVKRDRIYNMEIISLSDDKATV
Ga0169171_104035	Ga0169171_1040352	F057001	MTNKELTKVQSEVKKASEKTLTGAVKAWCNLFKSGKEINEILKDNDIQVDKAIVPALVALAKDKEIVIQLCKEILPRIDNTFCAYKEIEREYFDKLEQDKNIKTAVDKIENIAILGTNHKRFGYNEPVEYDGGIYYDIFNGQDKRIVKCAVPIKRYTFNLIAKCVTYYLTHPKNER
Ga0169171_104676	Ga0169171_1046763	F083452	MSGRIKIKSKDKDKRPKIDVFKVIENRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIERYIKR
Ga0169171_105709	Ga0169171_1057094	F076653	MTLRDKYFGWKDIFFSRFVHCDNEKNDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIDISSALQTLIRLTENAKHMFEDQPGVYDMIPYRGFFLRDDFSSGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGFILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDSFLGKKYRKNLRTFIYRGIVFFLDRIWHTPLFERMGVKMKYNAYYCYAATSGIWYDKGFKRRLAKRFNRSLSGGGELFG
Ga0169171_107197	Ga0169171_1071976	F080673	EALLYLRDNITREEAYYILTTENEMTEVLIAKKKDGGKRIKILDMEYTIERDDMLLLFDTDGIIDECLLTSSHIGINMYFRRQDIRDILSKKLEVMEYRYIKIQVDNIPVVEKRRVILDLTGHRVDRNDRDKIDFMFVYYMARLCV
Ga0169171_114314	Ga0169171_1143141	F089053	MEGPRPDKFASSVKLERVVDGCRPAKGCIKKRIYGSANGQPELSTAEEVNVKNMEAFL
Ga0169171_115192	Ga0169171_1151922	F044554	MAVCLPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFDSHRYCFSAFLVL