3300029350: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 063_3_11_stool_2

Overview

Basic Information

• IMG/M Taxon OID: 3300029350
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0283020 | Ga0243859
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 063_3_11_stool_2
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 170328671
• Sequencing Scaffolds: 12
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F044554	Metagenome	154	N
F052660	Metagenome	142	N
F055715	Metagenome	138	N
F056309	Metagenome	137	N
F059106	Metagenome	134	N
F070093	Metagenome	123	N
F078822	Metagenome	116	N
F081453	Metagenome	114	N
F088920	Metagenome	109	Y
F088921	Metagenome	109	N
F097493	Metagenome	104	Y
F101356	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243859_100111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	129094
Ga0243859_100154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	110655
Ga0243859_100363	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	67742
Ga0243859_100507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	52892
Ga0243859_100965	All Organisms → cellular organisms → Bacteria	27539
Ga0243859_100980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	26823
Ga0243859_101546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	15292
Ga0243859_102369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8883
Ga0243859_102879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	7086
Ga0243859_113356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1560
Ga0243859_121026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1041
Ga0243859_127559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	821

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243859_100111	Ga0243859_10011157	F081453	MSPFFLWIGENIVEKYISANPVCGTNIKAPELAVKGAPGRNCVQ
Ga0243859_100154	Ga0243859_10015445	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFDQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFDSHRYCFSAFLVL
Ga0243859_100363	Ga0243859_10036353	F088921	LGATIRLYKIWAGENHFLCSEKSKSTVFDLDRETKKRKYAKGTCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKLAMIRDKMRSK
Ga0243859_100507	Ga0243859_10050724	F052660	MCILRILPENTPEKIGQERAGTEWTVVKSKISLCIRNRSYGQFLHGGILMGIALPIPSHRAKSHDFAHWWPAAAGHSRSADALPGKSNS
Ga0243859_100965	Ga0243859_10096524	F078822	LPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0243859_100980	Ga0243859_1009801	F070093	GICRVSNFESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLSELNPN
Ga0243859_101546	Ga0243859_1015461	F056309	TPSLSVVPLLLGDSDSLSVSYGMEPEQEALSLVSFKD
Ga0243859_102369	Ga0243859_1023695	F088920	VKPRKITTSFFCFLHFFSFVSANLHHYPAFVAGLILHLILHFSQKAAIFAPKQTILFLFVPTLFFACLVAFSLHTSPKISGQTSLYQPWLSPYCLFKD
Ga0243859_102879	Ga0243859_10287911	F059106	MHAIVWKIRVILLQISVWIVDLKVRERLTEYLKKDIKYHQVIIEVLA
Ga0243859_113356	Ga0243859_1133562	F055715	LTKANEFDKINELLIERTAKKFERTSKNKLKKFLTNEKFCDKINKLI
Ga0243859_116752	Ga0243859_1167522	F101356	VGELIPVVTPEKDGLSNSKFATTKIKSEGKRSILLYRSSSSQWAPFAIRVSCISTGEPSSDFCVYIAGNTMELQDTTKVYVKYMYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ
Ga0243859_121026	Ga0243859_1210261	F026592	PSNLLAANSILCCLRTASPQGIAALAAQGGVATLTERSDETFPVGQFSSADRE
Ga0243859_127559	Ga0243859_1275593	F097493	TVYGIRTDSDILRIKRSVVNSKFAESEEDFDMNVEIAKIQHMDITLEQPTSEQLSQIQAKTYNSMTELKQHVQSIMNGELTQDEINAMLLLRIAEMEVAITNEQTTN