3300029229: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021220-43

Overview

Basic Information

• IMG/M Taxon OID: 3300029229
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0193090 | Ga0167470
• Sample Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021220-43
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 160920486
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-P9312	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F062845	Metagenome	130	N
F067720	Metagenome	125	Y
F067845	Metagenome	125	N
F071325	Metagenome	122	N
F081453	Metagenome	114	N
F087334	Metagenome	110	N
F087335	Metagenome	110	N
F089005	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0167470_100122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	132875
Ga0167470_100353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	65918
Ga0167470_100678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	37031
Ga0167470_101609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	15442
Ga0167470_101619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	15340
Ga0167470_102006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	11722
Ga0167470_102599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8543
Ga0167470_109678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2193
Ga0167470_127133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-P9312	742

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0167470_100122	Ga0167470_10012288	F081453	MYPFFLLAGENIIGKHTLANPVCGTNIKAPELAVKGAPEKDIRIP
Ga0167470_100353	Ga0167470_10035353	F067845	MKHWKNLLVCLLTGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAYAPELDNTAKAVAEWFVQEPDSLQVSGLDLVYTVALDADGNMGYTDDLNKFLYWSGCYGVPDDVTVALLLDDSTAMTARLYAPQADSAAAKLLDDAAGHNEMGAAFIDYNGAAYVVAVFR
Ga0167470_100678	Ga0167470_1006786	F087335	MLELYFNDGNLLPKNREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIKPTLNEVGEPELLIGCVTEETVGEVYQWVSNYD
Ga0167470_101609	Ga0167470_10160917	F089005	LTKSKQRSIIALALLRLATSNEESKQALKVRRTLKIEQRDNSKETRNDFEESSKNYS
Ga0167470_101619	Ga0167470_10161915	F071325	FKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0167470_102006	Ga0167470_1020062	F087334	MTSRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILIYPFRSSPLLAITFLYHPKDFFLCRAAALFEYREKHQ
Ga0167470_102599	Ga0167470_1025999	F067720	MASTTYRHLGDATGMYAAQEQFRDITKMVCDFVGLNKIDHFAVIVNMVRNAGQLPQPFWLGAACGGGSCSAARCAARTXXXXXXXXXPPSKAHRLGG
Ga0167470_109678	Ga0167470_1096782	F026489	XXXCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKRRATPEKTEDSRLFGVKIF
Ga0167470_127133	Ga0167470_1271331	F062845	MKKTPFILHEKFRSDDNEQRKERFQKEFERYIIDGLLNAVPSRSCA