Sample 3300029054

Overview

Basic Information
IMG/M Taxon OID	3300029054 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127429 \| Gp0193627 \| Ga0169633
Sample Name	Human fecal microbial communities from mother in Denmark - 281_M
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	161488493
Sequencing Scaffolds	12
Novel Protein Genes	12
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. ATCC BAA-442	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	Denmark
Coordinates	Lat. (^o)	55.678	Long. (^o)	12.531	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F044554	Metagenome	154	N
F047126	Metagenome	150	N
F051935	Metagenome	143	N
F052660	Metagenome	142	N
F071325	Metagenome	122	N
F081453	Metagenome	114	N
F087334	Metagenome	110	N
F087336	Metagenome	110	N
F090513	Metagenome	108	N
F102166	Metagenome	102	N

Family

Category

Number of Sequences

3D Structure?

F032286

Metagenome / Metatranscriptome

180

F044554

Metagenome

154

F047126

Metagenome

150

F051935

Metagenome

143

F052660

Metagenome

142

F071325

Metagenome

122

F081453

Metagenome

114

F087334

Metagenome

110

F087336

Metagenome

110

F090513

Metagenome

108

F102166

Metagenome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0169633_100067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	133296	Open in IMG/M
Ga0169633_101225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	15618	Open in IMG/M
Ga0169633_101536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	13045	Open in IMG/M
Ga0169633_101831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	11295	Open in IMG/M
Ga0169633_101976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	10640	Open in IMG/M
Ga0169633_102012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	10540	Open in IMG/M
Ga0169633_103236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7215	Open in IMG/M
Ga0169633_103417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	6918	Open in IMG/M
Ga0169633_107778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	3492	Open in IMG/M
Ga0169633_114327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. ATCC BAA-442	2004	Open in IMG/M
Ga0169633_115811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1826	Open in IMG/M
Ga0169633_138472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	707	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0169633_100067

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis

133296

Open in IMG/M

Ga0169633_101225

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

15618

Open in IMG/M

Ga0169633_101536

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

13045

Open in IMG/M

Ga0169633_101831

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

11295

Open in IMG/M

Ga0169633_101976

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

10640

Open in IMG/M

Ga0169633_102012

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

10540

Open in IMG/M

Ga0169633_103236

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

7215

Open in IMG/M

Ga0169633_103417

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

6918

Open in IMG/M

Ga0169633_107778

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

3492

Open in IMG/M

Ga0169633_114327

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. ATCC BAA-442

2004

Open in IMG/M

Ga0169633_115811

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

1826

Open in IMG/M

Ga0169633_138472

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

707

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0169633_100067	Ga0169633_10006742	F081453	MYPFFLLAGENIIEKHISANPVYVTNIKAPELAVKGAPGRKCIQ
Ga0169633_101225	Ga0169633_1012254	F087336	MHCLLRGMVAELEQVPKAFRAAGRQRRAAAKERIKGDTIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP
Ga0169633_101536	Ga0169633_1015365	F090513	MAKYVRKMEWKLLHIKHILYMRPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFTYGNTA
Ga0169633_101831	Ga0169633_1018318	F052660	MCILRVLPEKTSERIGQERAGTEWTVVKSKIRLCIRNRSYGRFLHGGILMGIALPIPAHRAKSHDFACWWPAAADHSRSADALPGKSNF
Ga0169633_101976	Ga0169633_1019768	F071325	GIVFRDFPSRLRFHKFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFSKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATVYL
Ga0169633_102012	Ga0169633_1020125	F087334	MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLCRAAALFEYREKHQ
Ga0169633_103236	Ga0169633_1032366	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAAFVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFVQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0169633_103417	Ga0169633_1034179	F071325	SRLRFHKFQYCSIFKVLLALLSDSSIIISKVILFVKHFFDIFLSFPNAFLKAFHLHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0169633_107778	Ga0169633_1077784	F044554	AQGKCCAAGGGSVSWRSASPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIALCLTLDFAISRYLFLSFSFSFRTNFDQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSTFLVL
Ga0169633_114327	Ga0169633_1143274	F032286	VTPVRHRALVFDARLSAGNTANDTLVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISPFSLALIFTFDFADLSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRLENAPKNADFHAYGQDRRKAGI
Ga0169633_115811	Ga0169633_1158112	F051935	MKRLLGLLLAMMVMMGGISCAVAENANPIVSDWLTELKSKRLIQIVEDEIGEGWTLYQPNGREEEENFSSAENLKEMRFLPVVAQKDNQLRLLILRRQGDLWKVSEQNDRALMRDGWMLQNFSAMPYGNSDWTYIYFDFVDENQKRWNLMLNLGDGYVSSFGTISHYVEGYGTTYINMNYDRGLEFLIDAPAYSRFSYEVYPVERYSFGVEDFDLATCPLTMQEFLVPAIVTCGEEGAGLYIMVQQDVQPIVTLADGDAIEAIPQKWELDWTIVYYQGNYLFMKTENCKMEE
Ga0169633_138472	Ga0169633_1384721	F102166	MKKLFSLLLVLALALVPTLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYRIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTALALDTMEEMVDYITEIANG

Scaffold ID

Protein ID

Family

Sequence

Ga0169633_100067

Ga0169633_10006742

F081453

MYPFFLLAGENIIEKHISANPVYVTNIKAPELAVKGAPGRKCIQ

Ga0169633_101225

Ga0169633_1012254

F087336

MHCLLRGMVAELEQVPKAFRAAGRQRRAAAKERIKGDTIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP

Ga0169633_101536

Ga0169633_1015365

F090513

MAKYVRKMEWKLLHIKHILYMRPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFTYGNTA

Ga0169633_101831

Ga0169633_1018318

F052660

MCILRVLPEKTSERIGQERAGTEWTVVKSKIRLCIRNRSYGRFLHGGILMGIALPIPAHRAKSHDFACWWPAAADHSRSADALPGKSNF

Ga0169633_101976

Ga0169633_1019768

F071325

GIVFRDFPSRLRFHKFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFSKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATVYL

Ga0169633_102012

Ga0169633_1020125

F087334

MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLCRAAALFEYREKHQ

Ga0169633_103236

Ga0169633_1032366

F047126

VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAAFVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFVQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC

Ga0169633_103417

Ga0169633_1034179

F071325

SRLRFHKFQYCSIFKVLLALLSDSSIIISKVILFVKHFFDIFLSFPNAFLKAFHLHAVRFPAAFLLVHRFYLAFEELLSCATAYL

Ga0169633_107778

Ga0169633_1077784

F044554

AQGKCCAAGGGSVSWRSASPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIALCLTLDFAISRYLFLSFSFSFRTNFDQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSTFLVL

Ga0169633_114327

Ga0169633_1143274

F032286

VTPVRHRALVFDARLSAGNTANDTLVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISPFSLALIFTFDFADLSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRLENAPKNADFHAYGQDRRKAGI

Ga0169633_115811

Ga0169633_1158112

F051935

MKRLLGLLLAMMVMMGGISCAVAENANPIVSDWLTELKSKRLIQIVEDEIGEGWTLYQPNGREEEENFSSAENLKEMRFLPVVAQKDNQLRLLILRRQGDLWKVSEQNDRALMRDGWMLQNFSAMPYGNSDWTYIYFDFVDENQKRWNLMLNLGDGYVSSFGTISHYVEGYGTTYINMNYDRGLEFLIDAPAYSRFSYEVYPVERYSFGVEDFDLATCPLTMQEFLVPAIVTCGEEGAGLYIMVQQDVQPIVTLADGDAIEAIPQKWELDWTIVYYQGNYLFMKTENCKMEE

Ga0169633_138472

Ga0169633_1384721

F102166

MKKLFSLLLVLALALVPTLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYRIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTALALDTMEEMVDYITEIANG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029054: Human fecal microbial communities from mother in Denmark - 281_M

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences