3300006568: Human stool microbial communities from NIH, USA - visit 2 of subject 765074482 replicate 2

Overview

Basic Information

• IMG/M Taxon OID: 3300006568
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052500 | Ga0100215
• Sample Name: Human stool microbial communities from NIH, USA - visit 2 of subject 765074482 replicate 2
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 185956004
• Sequencing Scaffolds: 21
• Novel Protein Genes: 21
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter → unclassified Oscillibacter → Oscillibacter sp. 1-3	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F026592	Metagenome / Metatranscriptome	197	Y
F029444	Metagenome	188	Y
F042936	Metagenome	157	N
F044554	Metagenome	154	N
F047755	Metagenome	149	Y
F055775	Metagenome	138	N
F062845	Metagenome	130	N
F067720	Metagenome	125	Y
F068811	Metagenome	124	N
F074899	Metagenome / Metatranscriptome	119	N
F076064	Metagenome	118	N
F078693	Metagenome	116	N
F081354	Metagenome	114	Y
F081453	Metagenome	114	N
F088914	Metagenome	109	N
F088921	Metagenome	109	N
F099269	Metagenome	103	N
F101355	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0100215_100616	Not Available	42653
Ga0100215_100669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	40124
Ga0100215_100864	All Organisms → cellular organisms → Bacteria	32848
Ga0100215_100953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia	30302
Ga0100215_101419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	21218
Ga0100215_101471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	20448
Ga0100215_101511	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	19946
Ga0100215_102653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	11835
Ga0100215_103242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	9772
Ga0100215_103497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	9051
Ga0100215_104952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6414
Ga0100215_105614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	5680
Ga0100215_106730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4699
Ga0100215_109337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3296
Ga0100215_109606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3199
Ga0100215_110876	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	2793
Ga0100215_110963	All Organisms → cellular organisms → Bacteria	2768
Ga0100215_111943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2516
Ga0100215_113727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter → unclassified Oscillibacter → Oscillibacter sp. 1-3	2125
Ga0100215_115010	Not Available	1907
Ga0100215_132939	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	683

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0100215_100616	Ga0100215_1006165	F055775	LVIEVATTAAALDGDTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIIDAKSGAVEAIALN*
Ga0100215_100669	Ga0100215_10066957	F026592	CQNRLRTASPQGIAALAVQGGVATLTERSDATFAGKQFSSADRE*
Ga0100215_100864	Ga0100215_1008644	F067720	MASTTYEHPGGVTEMYAVQEQFRHVTKMVCARFLDLTKTYRLGNVPVMVRNAGQLPQPFWLGASCGGGSCGAARCAART*
Ga0100215_100953	Ga0100215_10095327	F099269	VHGVLVSVQVGELLLLDDLGDRASGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRDRRCTPV*
Ga0100215_101419	Ga0100215_10141911	F081453	MYPFFLLAGNNIIEKHISANPVCGTNIRAPELAVKGAPGRKCIQ*
Ga0100215_101471	Ga0100215_10147125	F081453	MFPFFLLAGENIIEKHISANPVCGTNIKAPEPATKGAPGRKFV*
Ga0100215_101511	Ga0100215_10151115	F076064	LKKTIPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSVRRQIRLCAPDLKRRNETRRHPMPVLKLY*
Ga0100215_102653	Ga0100215_10265312	F013656	MEKIYKEPNKSETETTINVLYSENMLSIYTNKVNLQKQLNKLLGAPTKEDKIKRSIAGSRWNISLDDKTKIQKIILKANIYEL*
Ga0100215_103242	Ga0100215_10324213	F047755	MEEDKVKNVINIIKDMNIKDKLRLAICMTQSKLSGLIYNTKENYEKFDAMLKEVDEEYRTTLINFGQSKYFNINFAMAKLMEMETTEQNKVAFYLFNNIK*
Ga0100215_103497	Ga0100215_1034977	F042936	MGRGGGKGRVWKTKEGIMNTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG*
Ga0100215_104952	Ga0100215_1049527	F029444	MEVSEQLTGFELEDLMSWTVSNLQRPFREDFSLEKSGIIAEKESQILGCRFVGFDEPKKAAPFFNF*
Ga0100215_105614	Ga0100215_1056143	F078693	MVLAPVRGEERFFIKANCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGEVEVEKC*
Ga0100215_106730	Ga0100215_1067305	F062845	MEKTSFILHEKFHSETNQQRKERFQREFERYIVDRLSAADPSKAGV*
Ga0100215_109337	Ga0100215_1093371	F101355	MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKGAGAVFSYVLPRCSYFFKIFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA*
Ga0100215_109606	Ga0100215_1096064	F074899	MSGRKQWNKQAVTSSFLDKKPPESLILQGLEGSTTLGKDEVGSSNLPSSSK*
Ga0100215_110876	Ga0100215_1108763	F088921	LEAAKKIAVKTSALGATIRLYKIGARKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVTNKSAMIRDKMRSKS*
Ga0100215_110963	Ga0100215_1109634	F068811	MDQDESEHNICSNREGLCPGKEQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKVAVSVILNENVSETLCIFSIDKTNCCRI*
Ga0100215_111943	Ga0100215_1119433	F088914	VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENRKNSGKFIVFSAWYAAKALEMDVK*
Ga0100215_113727	Ga0100215_1137276	F081354	LSAKKALDLVRENQQSSAHNFVKDFSPIFLKSSRRSPLKKGAATENPLEYGKTEVQILFEPLPITISSMELPKNFENKKLPN
Ga0100215_115010	Ga0100215_1150101	F044554	AAGGGSVSWRSASPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCFTLDFAISRYLFFSFPFSFRANFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL*
Ga0100215_132939	Ga0100215_1329391	F076064	HAVRFAVGTNGEEGFRHHISEELKKTIPGRALDNLFYLQYDLPPEASFHATTEEAKRPDELYIRKLLPELTRLKLQPCHVVANDEAYYAAMKGISLFTPEAEKLMHRADYYSARRQIRLCAPDLKRRNEAKRPPKPALKFY*