3300029340: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 025_10_28_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029340
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0282888 | Ga0243727
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 025_10_28_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 227305269
• Sequencing Scaffolds: 29
• Novel Protein Genes: 33
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	2
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. 4_3_54A2FAA	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F032286	Metagenome / Metatranscriptome	180	Y
F032312	Metagenome / Metatranscriptome	180	N
F036964	Metagenome / Metatranscriptome	169	Y
F039198	Metagenome	164	Y
F047125	Metagenome / Metatranscriptome	150	N
F050793	Metagenome	145	N
F051934	Metagenome	143	N
F051935	Metagenome	143	N
F058154	Metagenome	135	N
F059982	Metagenome	133	N
F062845	Metagenome	130	N
F064817	Metagenome	128	N
F067720	Metagenome	125	Y
F068856	Metagenome	124	N
F072366	Metagenome	121	N
F078003	Metagenome	117	N
F081453	Metagenome	114	N
F084124	Metagenome	112	Y
F089053	Metagenome	109	Y
F094005	Metagenome / Metatranscriptome	106	N
F101191	Metagenome	102	N
F101193	Metagenome	102	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243727_1000035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	170871
Ga0243727_1000054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	133863
Ga0243727_1000173	Not Available	76356
Ga0243727_1000249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. 4_3_54A2FAA	58964
Ga0243727_1000391	Not Available	43334
Ga0243727_1002306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. 4_3_54A2FAA	11708
Ga0243727_1003527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	8114
Ga0243727_1004081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	7114
Ga0243727_1004774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6193
Ga0243727_1006443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	4811
Ga0243727_1009511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3394
Ga0243727_1009977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3255
Ga0243727_1012114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2769
Ga0243727_1015671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2224
Ga0243727_1016031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2182
Ga0243727_1016089	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2175
Ga0243727_1025938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1445
Ga0243727_1028943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1315
Ga0243727_1032869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1176
Ga0243727_1035171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1106
Ga0243727_1040082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	984
Ga0243727_1041589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	952
Ga0243727_1043004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	924
Ga0243727_1046310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	865
Ga0243727_1052388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	777
Ga0243727_1052623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	774
Ga0243727_1065122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	636
Ga0243727_1070022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	596
Ga0243727_1083366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	508

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243727_1000035	Ga0243727_1000035151	F084124	VFGGLNKQAKAFARATKENKHHFHSQRNALTMFLAFLFIMAVACFNKLSFSTQTAWLFAPDKLLYRKILWALPKPAIFEKIE
Ga0243727_1000035	Ga0243727_100003595	F084124	LLFGGLNKQAKAFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFNILSFSTQTAWLFVPKKLLYRKILWALPKPAIFEKIE
Ga0243727_1000054	Ga0243727_100005455	F084124	VWEKPTNTFRLRNLTIAKQVKAFARATKENTLHFHSQRNALTMFLAFLFIMAVACFNKLSLSTQTAWLFATEELLYRKILWALPKPAIFEKIE
Ga0243727_1000173	Ga0243727_100017328	F064817	MNIKNLFNRFRKRELELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDMVITKEKYQAAKDLVPAHDISDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLTHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
Ga0243727_1000173	Ga0243727_100017330	F105375	MKNNEIFQTTQHLNKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAMYSFLFQTPDTSNGAADAMVNFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0243727_1000173	Ga0243727_100017342	F032312	MARIKDYDEDLSAPKLLRERARDNKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVVLMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0243727_1000173	Ga0243727_100017343	F094005	MKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNAFVAYHQSKKSLEAIKKWLDDNGKHKDNETLEKVITLDKKLKKLIEKLNE
Ga0243727_1000249	Ga0243727_100024945	F036964	LEILKIIFPALMVIGALGSLVVNIVSKGEYAMSIQWLGAALLYTALMLRNNQ
Ga0243727_1000391	Ga0243727_10003916	F067720	MASTTYEHFVDANKMYATQEQFRHATKMVCARLRGFTKTYQFAVLGNMVRNAGQLPQPFWLGAACGGGSCSAARCAART
Ga0243727_1002306	Ga0243727_100230619	F036964	LDILKILFPALMVVGALGSLIVNLIDKGEHAISIQWLGATLLYTALMMRNIK
Ga0243727_1003527	Ga0243727_10035273	F089053	LCRAKRVLFGFGSRNGCVVGGCRLIKGCIRKWIYESANGQQELSTAEEVNVKNMEVFL
Ga0243727_1004081	Ga0243727_10040812	F039198	MKLTITEIQGTKYVQIYLTEDELQKKETKDLIKKYKQEKYSMAIFVTGKENYPEVLKKIVMKQVELNRNVC
Ga0243727_1004774	Ga0243727_10047746	F039198	MQITNTEMQSKKYVQIYLTEEELQKKETKDLVKKYKQEKYSVATFVSGKENYPEILEKIITKQVELNKNVC
Ga0243727_1006443	Ga0243727_10064433	F081453	MSPFFLLAGDNIIEKHISANPVCGTNIRAPELAVKGAPGSKCIQ
Ga0243727_1009511	Ga0243727_10095112	F026489	LTPKENQKSASDFDVLEPQKRGYSPLLTPKGWAAPEKTEDSRLFGVKIF
Ga0243727_1009977	Ga0243727_10099772	F026489	LFLRGKFLLAEGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF
Ga0243727_1012114	Ga0243727_10121142	F047125	MDVVLLLMVLGVMLSGFWAADALDHIRKEIIRQEGKRCGWWS
Ga0243727_1015671	Ga0243727_10156713	F068856	MKRLTSILLALLMLVGMALTEETPDAALGDWYALPSDETVLRLTLREDGTFFFGTEGISGIEGKWRKTTDGEYNLAYTNRSSSLLDVIMSMVDSQAPVPDMTMTARLTESGLDVFYGSTAEGAVVHMARDAEELRTERTPRTDTPLEAFAGTWTMETMFLGTMQLTYTPEMGEHQVFCTIDGLTMFPGAGLESFPEGTSFPLTFEDGVLRTTIPLTVQMAASSALVKEIVVDYDLTFFQTADGSLYATLRLNDVPDNPTTMFLLVPMEKE
Ga0243727_1016031	Ga0243727_10160312	F078003	VNEHLAFAQCLQRVLNETELTATEVARRLEMRSRNSIFRILKGKTSPQLNRRFLESFHKHMGEQLTEAQWAALNRALEMDAVGAVEYKSRQALMQLVGAFSEPISPAKVCYLDALGAEKEDSFLHYLQVLFCGALKVNALLFGCCDLGLFRQLQEAIHPVAQRVIVRIDHFIYAGEDEIVSNLVGIQPMVDQPCYHAYLVDAENCPQERLAHYRTGQMTFHVMHQDGSESTVALFLLGKNEFTATVMSTQDLWMSRKVLCDRERFSPIRLLWQLNDENSDFIVYTQQYCKMEHCAAIYYIRPDVPFQYIPLEVLYPVVREGFARMGMTREEYEPNVTALAEIHQARMTNMMRRRRPTYIVLNKAAMEEFVRTGRQSDHLHFLRNFTPKERKQILDVLVQQARENPFFHLYFAQEKLPYTMGEVALYDGRALITMSSGSGYDLR
Ga0243727_1016089	Ga0243727_10160893	F026489	LLAEGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKRRAPPEKTEDSRLFGVKIF
Ga0243727_1025938	Ga0243727_10259382	F026489	MRSAGKVLLAEGCSLLVAKENQKTTSDFDALEPRKRGYSPLLTPKRRAPPEKTEDSRLFGVKIF
Ga0243727_1028943	Ga0243727_10289431	F058154	ERNLATYLGLALTAVVTYLLQDVPKMLVGRHFGWKLVRYEAFGRVYQADGTGAFVRVPVPAQSRLRYQPYLLPPEDAPRHDVTLYTLCPLLYGGALAVVFGVLTLLTLGQPVSLVLCELAMGGVVLVMMCILPMDERFIASPMAIARMLRDPEQLAEWLYFARMKANGGVKVTDVSIENIPQPATVKTCQDAICVFQRAQIALMVQCDAQKAYGLMKQVLESEARLSYTAWKLLLSDGVVAELLAGEPGEFTALYRGKAGAAIRQVMFRMVDYALPAYAVAMLVTHEAREAEVVRNTLAPVREKMPELDALMKAIEEKAARIES
Ga0243727_1032869	Ga0243727_10328691	F051934	IDPVQYPAQERKLAQGLKSLFRLLTVEGDVVASDGSFDARIDLGLTNAPEKTATRIRFFGLDSHWGIQATDLGGETLMVNQLAWLEFAIKAYNHLDLPLQRVFLWLSPYAHTSAWAGLRQEIADLAAQETSGRLENTALITCAEEIARLSEDDRALYYYIEAFGLESGTDANIFDALATLPEYVEANFPDGLSIEHTENGVSWQNGEKTVFSYADADGTQVVSLHLPDLVDFSATLRRDALLFTGALSLQSDVLNADVSFSLPASYPVTLPFYAQIDADGMMTGDDGIHLAFEGEAQGDTVIIRRIQPDHSATMMTLTVKVIQVAEGTVKYAPEDVQGTNVLSVDGPALAELMGRIGKPMVRKVTQWLAALPAELVQGAMDAMEDSGLLGTL
Ga0243727_1035171	Ga0243727_10351711	F072366	MLDILAIKADVYQLERQGKRLPGYRYLREVWQKEAPSEGLTVLALQQMVDYVEYVDDLTVLGEPWEAENEYDLYQDFLLDVISWGLQKYRAKKRFLWQICYYVNAWATFYYIFGREITQENVEQWKKTLFEEAKERYPDSMLFEFIPHAAQLDYVWFYRLTDEQRLQIRLEVGEWNLQKNDMDQAVQSYFDDAMTWYRDNGRKLLEAKNKTNN
Ga0243727_1040082	Ga0243727_10400822	F059982	MRRMTRLLCLMLLFSLITFSCPLAEETDAPTGTPAPTPMLTAVPESALAPFNVVLPEDAHVEMAEGRITLVRGDSRVVAMVISRVPDEDPAAALPILMQDFDPKTSETMDFDAQPGFCILGGVVNDAFGDGEDKITLMVLADSGELLILSGYNLARDHHALYLFLTELLENVSMDGAAVYVAEDAAATASPEA
Ga0243727_1041589	Ga0243727_10415891	F101191	LLISHHPASAECLQLGEGMLLCGFDLDKALSSRDPLDCMAEAVADDTKRIGTTCGGGIFRAVPREFDPESGSHRLPFAGSIRLIDWRVTLSGTMLDVTPENLARLLPSDTEMTERVTTLTPKQARKPLSRLCWIGTTSRGLLLIELRNPLCISGASLTSVPDGAGR
Ga0243727_1043004	Ga0243727_10430042	F062845	MTTKWTEKGDSMKKTPFILHEKFRSDNNEQRKEDFQKEFERYIIDGLLNAVPSRACT
Ga0243727_1046310	Ga0243727_10463103	F032286	MVKWVCQIVTPVRHRALIFDARLFAGNAADDALVTYGTFRFCRLMCLCVKRRNIKPDSKRRSLPDSALFHADNRTEQKTISPFSLALIFTFDFAALSERRSCPEDRFRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIA
Ga0243727_1052388	Ga0243727_10523881	F081453	EMSPFFLLAGENIIEKHISANPVYVTNIKAPELAVKGAPGRKCVQ
Ga0243727_1052623	Ga0243727_10526231	F051935	ILTFLLAAALLLTSLSCALADGTSPIVSDGLTELKSKRLIQIVEDEIGEGWTLYQPNGREEEENFSSAENLKEMRFLPVVAQKDNQLRLLILRRQGDLWKVSEQNDRALMRDGWTLQNFSAMPYGNSDWTYIFFDFVDENQKRWELMLNLGDGYVSSFGTISYYVEGYGTTYINMNYDRGLEFLIDAPAYSRFSYEVYPVERYSFGVEDFDLATCPLTMQEFLVPAIVTCGEEGAGLYIMVQQDVQPIVTLADGDAI
Ga0243727_1065122	Ga0243727_10651223	F026489	SASDFDALEPRKRGCSPLLTPKRRATPEKTEDSRLFGVKIF
Ga0243727_1070022	Ga0243727_10700221	F101193	HCGKLCKPSRFKAATVLVPIELVIFVVCIFFRNSMNDAIGWFAAWLLFVLLLFLPQYIYVRFFMPYETLSEDETRKFRDLQEH
Ga0243727_1083366	Ga0243727_10833661	F050793	ENVEMADIHAIQTRVKKHNLLTVALLIPLFAGYALYQQESTETLGGIVFVLSMVLMVLGFVSGRGDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGSGYRVQLGVLDEKTGAWENDEQDEVFPTLIDVREYASQEGYEPMDVDFEQMTDEEFQQFLD