3300029607: Human fecal microbial communities from Shanghai, China - P025V1

Overview

Basic Information

• IMG/M Taxon OID: 3300029607
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133133 | Gp0283530 | Ga0244907
• Sample Name: Human fecal microbial communities from Shanghai, China - P025V1
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 183441145
• Sequencing Scaffolds: 12
• Novel Protein Genes: 16
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:321	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2112312
  • Long. (^o): 121.4647709
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F047126	Metagenome	150	N
F052660	Metagenome	142	N
F055715	Metagenome	138	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F067845	Metagenome	125	N
F068811	Metagenome	124	N
F068941	Metagenome	124	N
F076064	Metagenome	118	N
F081453	Metagenome	114	N
F090515	Metagenome	108	N
F092228	Metagenome	107	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244907_100027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	244441
Ga0244907_100263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	76171
Ga0244907_100300	Not Available	68861
Ga0244907_101890	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	15263
Ga0244907_102381	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12315
Ga0244907_104654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	6550
Ga0244907_104680	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	6516
Ga0244907_105729	All Organisms → cellular organisms → Bacteria	5262
Ga0244907_110756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2662
Ga0244907_117842	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1519
Ga0244907_118152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1488
Ga0244907_119458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:321	1374

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244907_100027	Ga0244907_10002720	F092228	MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGSLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKDSDTLEKIGDIKFDNQIYYINISDGNLYIAERIFEDETDEYGYSLKVGKQYIFKKYDLKSCKLLKSKNANYVNGLRYVTVCKDNFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIICKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGVANSWVKCYLIDQLAIS
Ga0244907_100263	Ga0244907_10026358	F081453	MFPFFLLAGENIIEKHISANSVCGTNIKAPEPAVKGAPGRKFV
Ga0244907_100300	Ga0244907_10030056	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKIVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV
Ga0244907_100300	Ga0244907_10030058	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADVLVNFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0244907_100300	Ga0244907_10030066	F044555	MKTTNPSSRITISQNGNQILSCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLGKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKNTISRFQAQYNIQEINPYLQNILQNPGDLVSLSQHHKR
Ga0244907_100300	Ga0244907_10030071	F060985	MSNIDEEAKNNFTIEMRIFENYEKVKYEIIKVIDFLRHAGTNLGMCRIFDNQNHEFWHSVIKPWFQPERFGITHLWFTSGFSFIGYGEYHTIRGNRWMKTPIDKIAPIDKIDKEDRIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD
Ga0244907_100300	Ga0244907_10030072	F032312	MARIKDYDEDLSAPKILRRRDNKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYTFILVVWFIIFLYGLVS
Ga0244907_101890	Ga0244907_10189014	F052660	MCILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGQFLHGGILMGIALPIPSHRAKSHDFAHWWPAAAGHSRSADALPGKSNP
Ga0244907_102381	Ga0244907_10238119	F055715	MNELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIRVGTAEILDN
Ga0244907_104654	Ga0244907_1046548	F047126	LYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIARFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKTSKNVLTNACQSAIITKC
Ga0244907_104680	Ga0244907_1046807	F090515	VTTCCKAGQKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVLAFTALLCRHIGSIRTFLKS
Ga0244907_105729	Ga0244907_1057295	F068941	MKNNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVKANEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFDLYATGKNATLNG
Ga0244907_110756	Ga0244907_1107562	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAYAPELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMGHTDDLNAFLYWSGCYGVPKDVTVALLLDDSAAMTAWLYAPQADSAAAELLDDAVGHNEMGAAFIDYNGTAYVVAVFR
Ga0244907_117842	Ga0244907_1178422	F076064	LKKTTPGRALENLFYLQYDLPPEVSFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLILTEDYFSVRRQIRLCAPDLKRRNETRRHPMPVLKLY
Ga0244907_118152	Ga0244907_1181523	F068811	MDQDGSEHNICSNREGLCPGKKQHGASGWKKIFQHGKEPLRNKDSISQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRIK
Ga0244907_119458	Ga0244907_1194582	F068941	VSLKEQYLDKGVERMDNKKFIIGVILLLLLMIGGTYAYYKWSSSDNMNVNVKIDGGTVTFDGGTNITSTIMPTATKEEGIKKDITVKASKEGVTINLYMDLTTIPSELKEKSFEYEIYYNGTTLVKKGNFGVYNSNTNTSGISYATSGXXXXTLFTGRDVSTSNTDKYTLYLWFNGKDYTNPNTMQSKKLSFDLYATGENAVLAGN