3300000360: Human fecal microbial communities from Cork, Ireland - EM205

Overview

Basic Information

• IMG/M Taxon OID: 3300000360
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045762 | Gp0054125 | Ga0011243
• Sample Name: Human fecal microbial communities from Cork, Ireland - EM205
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI), Macrogen
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 155322416
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Johnsonella → Johnsonella ignava	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Cork, Ireland
• Coordinates
  • Lat. (^o): 51.907
  • Long. (^o): -8.472
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039198	Metagenome	164	Y
F051935	Metagenome	143	N
F076190	Metagenome	118	Y
F078004	Metagenome	117	N
F081453	Metagenome	114	N
F090513	Metagenome	108	N
F099451	Metagenome	103	N
F101192	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
EM205_1022976	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2545
EM205_1038119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2544
EM205_1071476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Johnsonella → Johnsonella ignava	1311
EM205_1079046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	739
EM205_1088281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	9702
EM205_1100950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	686
EM205_1130914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	8463

Sequences

Scaffold ID	Protein ID	Family	Sequence
EM205_1008508	EM205_10085087	F078004	LSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDVHMLRHTLIITIINALYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF*
EM205_1022976	EM205_10229762	F099451	MEIKNVGQLRKIIENLSDDYEIEMRIRRRLTDEELKNCRYPYPYDTEYLTLEFDDIGVSDKVLCLGVTSNE*
EM205_1038119	EM205_10381193	F051935	MKRLLGLLMAVMVMMGGISCAVAENANPLVSDWLTELKSKRLIQIVEDEIGEGWTLYQPNGREEEENFSSAANLKEMRFLPVVAQKDNQLRLLILRRQGDLWKVSEQNDRALMRDGWTLQNFSAMPYGNSDWTYIFFDFVDENQKRWELMLNLGDGYVSSFDAISYYVEGYGTTYINMNYDRGLEFLIDAPAYSRLSYEVYPVEDYSFGVEDFDLATCPLSMQEFLVSAIVTCGEEGAGLYIMVQQDVQPIVTL
EM205_1071476	EM205_10714761	F076190	SVKNVFMAASRVSRRVWSLVRITIPNDLKSVRIGVEKPQNNSLYPYF*
EM205_1079046	EM205_10790461	F101192	MTYRGWLLVGIALLLTALSGTQTSLCQRMRSVPVYRGLTYWEVQQIAKAAPTSITPCGEDNIRRWVSERYQIALRFNRYDICLGVEEEIDG*
EM205_1088281	EM205_10882815	F039198	MQITSCEVTNTKYTQIYLTEEELQKQETKELIKKYKKEKHRMAIFVTGKENYPEILKKIITKQVELKNNVC*
EM205_1100950	EM205_11009502	F090513	MAKYVRKMEWKLLHIKHILYMQPFGALKIAPQRVGNKNGTKAVLQGWA
EM205_1130914	EM205_11309146	F081453	MYPFFLLAGENIIEKHISANPVYVTNIKAPELAVKGAPGRKCIQ*