Sample 3300029124

Overview

Basic Information
IMG/M Taxon OID	3300029124 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127429 \| Gp0193533 \| Ga0169224
Sample Name	Human fecal microbial communities from mother in Denmark - 180_M
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	171917659
Sequencing Scaffolds	10
Novel Protein Genes	11
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria	1
Not Available	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	Denmark
Coordinates	Lat. (^o)	55.676097	Long. (^o)	12.568337	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F044554	Metagenome	154	N
F047126	Metagenome	150	N
F055715	Metagenome	138	N
F078693	Metagenome	116	N
F078822	Metagenome	116	N
F081453	Metagenome	114	N
F082887	Metagenome / Metatranscriptome	113	Y
F087334	Metagenome	110	N
F089054	Metagenome	109	N
F090515	Metagenome	108	N
F101356	Metagenome	102	N

Family

Category

Number of Sequences

3D Structure?

F044554

Metagenome

154

F047126

Metagenome

150

F055715

Metagenome

138

F078693

Metagenome

116

F078822

Metagenome

116

F081453

Metagenome

114

F082887

Metagenome / Metatranscriptome

113

F087334

Metagenome

110

F089054

Metagenome

109

F090515

Metagenome

108

F101356

Metagenome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0169224_1000191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	47993	Open in IMG/M
Ga0169224_1000730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	20099	Open in IMG/M
Ga0169224_1005324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4775	Open in IMG/M
Ga0169224_1006140	All Organisms → cellular organisms → Bacteria	4256	Open in IMG/M
Ga0169224_1026715	Not Available	1271	Open in IMG/M
Ga0169224_1027727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1233	Open in IMG/M
Ga0169224_1040681	Not Available	887	Open in IMG/M
Ga0169224_1048273	Not Available	760	Open in IMG/M
Ga0169224_1055418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	669	Open in IMG/M
Ga0169224_1066534	Not Available	568	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0169224_1000191

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis

47993

Open in IMG/M

Ga0169224_1000730

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

20099

Open in IMG/M

Ga0169224_1005324

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

4775

Open in IMG/M

Ga0169224_1006140

All Organisms → cellular organisms → Bacteria

4256

Open in IMG/M

Ga0169224_1026715

Not Available

1271

Open in IMG/M

Ga0169224_1027727

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

1233

Open in IMG/M

Ga0169224_1040681

Not Available

887

Open in IMG/M

Ga0169224_1048273

Not Available

760

Open in IMG/M

Ga0169224_1055418

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74

669

Open in IMG/M

Ga0169224_1066534

Not Available

568

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0169224_1000191	Ga0169224_10001917	F081453	MYPFFLLAGENIVEKYISANPVCGTNIRAPELAVKGAPGRKCVQ
Ga0169224_1000730	Ga0169224_10007301	F055715	LTKANEFDKINELLIERTAKKLKKTSKKFLTNEKLCGKINELIRVGTAKILDN
Ga0169224_1005324	Ga0169224_10053242	F078693	MVLALVRGEERFYVKWNCSLLMSKENQKTTSDFDALDPRERGCSPLSDPKGEVETEKS
Ga0169224_1006140	Ga0169224_10061403	F089054	MLTKGKFLVSFEVPGHTKDYTEGFTEEMVIPYRTEELNPYLRYPHQEINKNHLHSEFIRLRLREILQINLSDITIIDVIPLP
Ga0169224_1026715	Ga0169224_10267152	F078822	FLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0169224_1027727	Ga0169224_10277272	F090515	ACQESVTTCCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVPAFTALLCRHIGSIRTFLKS
Ga0169224_1040681	Ga0169224_10406812	F082887	MEKLKKIAKYATNILAIISALVAGINAVDGITIPYAIQIVQIIAVIQGVIGTYLLGQKVVTNKEDK
Ga0169224_1048273	Ga0169224_10482731	F087334	YPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSLLLAITFLYHPKDFFLYRAAALFEYREKHP
Ga0169224_1055418	Ga0169224_10554183	F047126	KKMTNILQTQAGFKAKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0169224_1063248	Ga0169224_10632482	F101356	KTDVGELMPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPLSDFCVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ
Ga0169224_1066534	Ga0169224_10665341	F044554	FIPVLCASIARLFPCRTEIARCLTLDFAISQYLFLSFPFSFRTNFAQTLFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL

Scaffold ID

Protein ID

Family

Sequence

Ga0169224_1000191

Ga0169224_10001917

F081453

MYPFFLLAGENIVEKYISANPVCGTNIRAPELAVKGAPGRKCVQ

Ga0169224_1000730

Ga0169224_10007301

F055715

LTKANEFDKINELLIERTAKKLKKTSKKFLTNEKLCGKINELIRVGTAKILDN

Ga0169224_1005324

Ga0169224_10053242

F078693

MVLALVRGEERFYVKWNCSLLMSKENQKTTSDFDALDPRERGCSPLSDPKGEVETEKS

Ga0169224_1006140

Ga0169224_10061403

F089054

MLTKGKFLVSFEVPGHTKDYTEGFTEEMVIPYRTEELNPYLRYPHQEINKNHLHSEFIRLRLREILQINLSDITIIDVIPLP

Ga0169224_1026715

Ga0169224_10267152

F078822

FLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL

Ga0169224_1027727

Ga0169224_10277272

F090515

ACQESVTTCCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVPAFTALLCRHIGSIRTFLKS

Ga0169224_1040681

Ga0169224_10406812

F082887

MEKLKKIAKYATNILAIISALVAGINAVDGITIPYAIQIVQIIAVIQGVIGTYLLGQKVVTNKEDK

Ga0169224_1048273

Ga0169224_10482731

F087334

YPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSLLLAITFLYHPKDFFLYRAAALFEYREKHP

Ga0169224_1055418

Ga0169224_10554183

F047126

KKMTNILQTQAGFKAKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC

Ga0169224_1063248

Ga0169224_10632482

F101356

KTDVGELMPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPLSDFCVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ

Ga0169224_1066534

Ga0169224_10665341

F044554

FIPVLCASIARLFPCRTEIARCLTLDFAISQYLFLSFPFSFRTNFAQTLFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029124: Human fecal microbial communities from mother in Denmark - 180_M

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences