3300029686: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37305R1

Overview

Basic Information

• IMG/M Taxon OID: 3300029686
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283840 | Ga0245204
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37305R1
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 180124178
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → Parabacteroides gordonii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F044554	Metagenome	154	N
F051936	Metagenome	143	N
F076064	Metagenome	118	N
F081453	Metagenome	114	N
F089005	Metagenome	109	N
F090514	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245204_100166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	128358
Ga0245204_100241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	104422
Ga0245204_101643	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	19002
Ga0245204_102175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	13473
Ga0245204_104974	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → Parabacteroides gordonii	4726
Ga0245204_122107	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	849
Ga0245204_130741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	581

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245204_100166	Ga0245204_10016689	F081453	MSPFFLLAGDNIIKKHISANPVCGTNIRAPELAVKGAPGRKCIQ
Ga0245204_100241	Ga0245204_10024145	F032286	MVKWVCQIVTPVRHRALVFNTRLFAGNAADDALVTGNTFRFCRLVCLCVKRRNVKPDSKHRSLLDSALFHADNRTEQKTISPFSLASIFTFDFAALSERRSCPEDRSRRFVPVGTLTLLRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKSADFHAYGQGRKEQKIEGRTPLCSQNSPFRNGSKTCV
Ga0245204_101643	Ga0245204_1016439	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAESILFLPFENEIAHLQGQYRFNSHRYCFSAFLVL
Ga0245204_102175	Ga0245204_10217517	F089005	LTKSKQRSIIALALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSE
Ga0245204_104974	Ga0245204_1049743	F051936	MKQEGTGQVLFFPLALRSKALGFSVLQEHAVMIPVISIFFATLIIRYLSIHISIKK
Ga0245204_122107	Ga0245204_1221071	F076064	FRHHISEELKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELIRLKLQPRHIVANDEAYYAAMKGVMLFTPEAEKLMHRADYYSARRQIRLCAPDLKRRNEVKRPPRPALKFY
Ga0245204_130741	Ga0245204_1307412	F090514	GVKTAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFVNRPIFVYFADILPRLTGAKWFVILLTIVPAGSRARAGSSLPLIPASNIF