NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300029686

3300029686: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37305R1



Overview

Basic Information
IMG/M Taxon OID3300029686 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0133139 | Gp0283840 | Ga0245204
Sample NameHuman fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37305R1
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size180124178
Sequencing Scaffolds7
Novel Protein Genes7
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → Parabacteroides gordonii1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUnited Kingdom: London
CoordinatesLat. (o)51.5Long. (o)-0.12Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032286Metagenome / Metatranscriptome180Y
F044554Metagenome154N
F051936Metagenome143N
F076064Metagenome118N
F081453Metagenome114N
F089005Metagenome109N
F090514Metagenome108N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0245204_100166All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis128358Open in IMG/M
Ga0245204_100241All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales104422Open in IMG/M
Ga0245204_101643All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae19002Open in IMG/M
Ga0245204_102175All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii13473Open in IMG/M
Ga0245204_104974All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → Parabacteroides gordonii4726Open in IMG/M
Ga0245204_122107All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes849Open in IMG/M
Ga0245204_130741All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae581Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0245204_100166Ga0245204_10016689F081453MSPFFLLAGDNIIKKHISANPVCGTNIRAPELAVKGAPGRKCIQ
Ga0245204_100241Ga0245204_10024145F032286MVKWVCQIVTPVRHRALVFNTRLFAGNAADDALVTGNTFRFCRLVCLCVKRRNVKPDSKHRSLLDSALFHADNRTEQKTISPFSLASIFTFDFAALSERRSCPEDRSRRFVPVGTLTLLRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKSADFHAYGQGRKEQKIEGRTPLCSQNSPFRNGSKTCV
Ga0245204_101643Ga0245204_1016439F044554VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAESILFLPFENEIAHLQGQYRFNSHRYCFSAFLVL
Ga0245204_102175Ga0245204_10217517F089005LTKSKQRSIIALALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSE
Ga0245204_104974Ga0245204_1049743F051936MKQEGTGQVLFFPLALRSKALGFSVLQEHAVMIPVISIFFATLIIRYLSIHISIKK
Ga0245204_122107Ga0245204_1221071F076064FRHHISEELKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELIRLKLQPRHIVANDEAYYAAMKGVMLFTPEAEKLMHRADYYSARRQIRLCAPDLKRRNEVKRPPRPALKFY
Ga0245204_130741Ga0245204_1307412F090514GVKTAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFVNRPIFVYFADILPRLTGAKWFVILLTIVPAGSRARAGSSLPLIPASNIF

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.