Basic Information | |
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IMG/M Taxon OID | 3300029686 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133139 | Gp0283840 | Ga0245204 |
Sample Name | Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37305R1 |
Sequencing Status | Permanent Draft |
Sequencing Center | Beijing Genomics Institute (BGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 180124178 |
Sequencing Scaffolds | 7 |
Novel Protein Genes | 7 |
Associated Families | 7 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → Parabacteroides gordonii | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
Location Information | ||||||||
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Location | United Kingdom: London | |||||||
Coordinates | Lat. (o) | 51.5 | Long. (o) | -0.12 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F032286 | Metagenome / Metatranscriptome | 180 | Y |
F044554 | Metagenome | 154 | N |
F051936 | Metagenome | 143 | N |
F076064 | Metagenome | 118 | N |
F081453 | Metagenome | 114 | N |
F089005 | Metagenome | 109 | N |
F090514 | Metagenome | 108 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0245204_100166 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis | 128358 | Open in IMG/M |
Ga0245204_100241 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 104422 | Open in IMG/M |
Ga0245204_101643 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 19002 | Open in IMG/M |
Ga0245204_102175 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii | 13473 | Open in IMG/M |
Ga0245204_104974 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → Parabacteroides gordonii | 4726 | Open in IMG/M |
Ga0245204_122107 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes | 849 | Open in IMG/M |
Ga0245204_130741 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 581 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0245204_100166 | Ga0245204_10016689 | F081453 | MSPFFLLAGDNIIKKHISANPVCGTNIRAPELAVKGAPGRKCIQ |
Ga0245204_100241 | Ga0245204_10024145 | F032286 | MVKWVCQIVTPVRHRALVFNTRLFAGNAADDALVTGNTFRFCRLVCLCVKRRNVKPDSKHRSLLDSALFHADNRTEQKTISPFSLASIFTFDFAALSERRSCPEDRSRRFVPVGTLTLLRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKSADFHAYGQGRKEQKIEGRTPLCSQNSPFRNGSKTCV |
Ga0245204_101643 | Ga0245204_1016439 | F044554 | VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAESILFLPFENEIAHLQGQYRFNSHRYCFSAFLVL |
Ga0245204_102175 | Ga0245204_10217517 | F089005 | LTKSKQRSIIALALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSE |
Ga0245204_104974 | Ga0245204_1049743 | F051936 | MKQEGTGQVLFFPLALRSKALGFSVLQEHAVMIPVISIFFATLIIRYLSIHISIKK |
Ga0245204_122107 | Ga0245204_1221071 | F076064 | FRHHISEELKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELIRLKLQPRHIVANDEAYYAAMKGVMLFTPEAEKLMHRADYYSARRQIRLCAPDLKRRNEVKRPPRPALKFY |
Ga0245204_130741 | Ga0245204_1307412 | F090514 | GVKTAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFVNRPIFVYFADILPRLTGAKWFVILLTIVPAGSRARAGSSLPLIPASNIF |
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