Metagenome / Metatranscriptome Family F077438

Overview

Basic Information

• Family ID: F077438
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 117
• Average Sequence Length: 42 residues
• Representative Sequence: THRVELSFTQSRFETLFLWNLQVEISSALRPKAEKEISSYKN
• Number of Associated Samples: 111
• Number of Associated Scaffolds: 117

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 94.87 %
• % of genes from short scaffolds (< 2000 bps): 94.87 %
• Associated GOLD sequencing projects: 108
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (65.812 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine (18.103 % of family members)
• Environment Ontology (ENVO): Unclassified (37.607 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline) (36.752 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 57.14%
  β-sheet: 0.00%
  Coil/Unstructured: 42.86%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.81 %
Unclassified	root	N/A	34.19 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.81 %
Unclassified	root	N/A	34.19 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.81 %
Unclassified	root	N/A	34.19 %

Level 4

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.56 %
Unclassified	root	N/A	34.19 %

Level 5

Name	Rank	Taxonomy	Distribution
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	1.71 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.56 %
Unclassified	root	N/A	34.19 %

Level 6

Name	Rank	Taxonomy	Distribution
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.71 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.85 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.85 %
Unclassified	root	N/A	34.19 %

Level 7

Name	Rank	Taxonomy	Distribution
Bacteroidia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	1.71 %
Enterobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	0.85 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.85 %
Unclassified	root	N/A	34.19 %

Level 8

Name	Rank	Taxonomy	Distribution
Bacteroidales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1.71 %
Escherichia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	0.85 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.85 %
Unclassified	root	N/A	34.19 %

Level 9

Name	Rank	Taxonomy	Distribution
Escherichia coli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	0.85 %
Porphyromonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1.71 %
Pseudomonas syringae group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group	0.85 %
Unclassified	root	N/A	34.19 %

Level 10

Name	Rank	Taxonomy	Distribution
Escherichia coli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	0.85 %
Pseudomonas syringae group genomosp. 1	species subgroup	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1	0.85 %
Sanguibacteroides	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Sanguibacteroides	1.71 %
Unclassified	root	N/A	34.19 %

Level 11

Name	Rank	Taxonomy	Distribution
Escherichia coli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	0.85 %
Pseudomonas syringae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1 → Pseudomonas syringae	0.85 %
Sanguibacteroides justesenii	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Sanguibacteroides → Sanguibacteroides justesenii	1.71 %
Unclassified	root	N/A	34.19 %

Associated Scaffolds

Scaffold	Taxonomy	Length
(restricted) 3300023114|Ga0233405_10024998	Not Available	860
(restricted) 3300027730|Ga0247833_1224343	Not Available	684
3300000519|RepKanNP_Acetate_BrdU_F21BDRAFT_1004337	All Organisms → cellular organisms → Bacteria	1250
3300000519|RepKanNP_Acetate_BrdU_F21BDRAFT_1005741	All Organisms → cellular organisms → Bacteria	1010
3300001114|JGI11758J13082_107410	All Organisms → cellular organisms → Bacteria	609
3300001197|Draft_1001839	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Sanguibacteroides → Sanguibacteroides justesenii	1717
3300001286|JGI12103J14257_105705	All Organisms → cellular organisms → Bacteria	634
3300001419|JGI11705J14877_10201024	Not Available	511
3300001939|GOS2225_1002050	All Organisms → cellular organisms → Bacteria	1810
3300001964|GOS2234_1016458	All Organisms → cellular organisms → Bacteria	2917

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Engineered	Engineered	4.31%
Environmental	Environmental	81.03%
Host-Associated	Host-Associated	14.66%

Class

Habitat	Taxonomy	Distribution
Air	Environmental → Air	2.59%
Algae	Host-Associated → Algae	0.86%
Aquatic	Environmental → Aquatic	64.66%
Arthropoda	Host-Associated → Arthropoda	0.86%
Built Environment	Engineered → Built Environment	1.72%
Fish	Host-Associated → Fish	0.86%
Fungi	Host-Associated → Fungi	0.86%
Human	Host-Associated → Human	6.90%
Mammals	Host-Associated → Mammals	0.86%
Plants	Host-Associated → Plants	3.45%
Solid Waste	Engineered → Solid Waste	0.86%
Terrestrial	Environmental → Terrestrial	13.79%
Unclassified	Engineered → Unclassified	1.72%

Category

Habitat	Taxonomy	Distribution
Brown Algae	Host-Associated → Algae → Brown Algae	0.86%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.86%
Digestive System	Host-Associated → Human → Digestive System	1.72%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.86%
Digestive System	Host-Associated → Mammals → Digestive System	0.86%
Digestive System	Host-Associated → Fish → Digestive System	0.86%
Excretory System	Host-Associated → Human → Excretory System	1.72%
Freshwater	Environmental → Aquatic → Freshwater	17.24%
Landfill	Engineered → Solid Waste → Landfill	0.86%
Marine	Environmental → Aquatic → Marine	45.69%
Mycelium	Host-Associated → Fungi → Mycelium	0.86%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	0.86%
Oil Reservoir	Environmental → Terrestrial → Oil Reservoir	0.86%
Outdoor Air	Environmental → Air → Outdoor Air	2.59%
Peat	Environmental → Terrestrial → Peat	0.86%
Phylloplane	Host-Associated → Plants → Phylloplane	0.86%
Respiratory System	Host-Associated → Human → Respiratory System	3.45%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.72%
Roots	Host-Associated → Plants → Roots	0.86%
Sediment	Environmental → Aquatic → Sediment	0.86%
Soil	Environmental → Terrestrial → Soil	11.21%
Unclassified	Engineered → Unclassified → Unclassified	1.72%
Unclassified	Engineered → Built Environment → Unclassified	1.72%

Type

Habitat	Taxonomy	Distribution
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.86%
Coastal	Environmental → Aquatic → Marine → Coastal	4.31%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.86%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	3.45%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.86%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	3.45%
Ice	Environmental → Aquatic → Freshwater → Ice	1.72%
Inlet	Environmental → Aquatic → Marine → Inlet	0.86%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.72%
Intestine	Host-Associated → Fish → Digestive System → Intestine	0.86%
Lake	Environmental → Aquatic → Freshwater → Lake	5.17%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	1.72%
Large Intestine	Host-Associated → Mammals → Digestive System → Large Intestine	0.86%
Lentic	Environmental → Aquatic → Freshwater → Lentic	2.59%
Liver	Host-Associated → Human → Excretory System → Liver	1.72%
Loam	Environmental → Terrestrial → Soil → Loam	3.45%
Lung	Host-Associated → Human → Respiratory System → Lung	2.59%
Nasopharyngeal	Host-Associated → Human → Respiratory System → Nasopharyngeal	0.86%
Oceanic	Environmental → Aquatic → Marine → Oceanic	10.34%
Pond	Environmental → Aquatic → Freshwater → Pond	0.86%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	0.86%
Sand	Environmental → Terrestrial → Soil → Sand	1.72%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.86%
Strait	Environmental → Aquatic → Marine → Strait	4.31%
Unclassified	Environmental → Aquatic → Marine → Unclassified	20.69%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	4.31%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	2.59%
Unclassified	Environmental → Air → Outdoor Air → Unclassified	2.59%
Unclassified	Engineered → Unclassified → Unclassified → Unclassified	1.72%
Unclassified	Engineered → Built Environment → Unclassified → Unclassified	1.72%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Oil Reservoir → Unclassified	0.86%
Unclassified	Host-Associated → Algae → Brown Algae → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.86%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.86%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified	0.86%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.72%

Subtype

Habitat	Taxonomy	Distribution
Anterior Nares	Host-Associated → Human → Respiratory System → Nasopharyngeal → Anterior Nares	0.86%
Bile	Host-Associated → Human → Excretory System → Liver → Bile	1.72%
Black Smokers	Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers	1.72%
Cecum	Host-Associated → Mammals → Digestive System → Large Intestine → Cecum	0.86%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.86%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	1.72%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	0.86%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	1.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.72%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.72%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.86%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.86%
Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment	1.72%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.86%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment	0.86%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	20.69%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	10.34%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	5.17%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	4.31%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	3.45%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.59%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	2.59%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	2.59%
Unclassified	Environmental → Air → Outdoor Air → Unclassified → Unclassified	2.59%
Unclassified	Host-Associated → Human → Respiratory System → Lung → Unclassified	2.59%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	1.72%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	1.72%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	1.72%
Unclassified	Engineered → Unclassified → Unclassified → Unclassified → Unclassified	1.72%
Unclassified	Engineered → Built Environment → Unclassified → Unclassified → Unclassified	1.72%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.86%
Unclassified	Environmental → Aquatic → Freshwater → Pond → Unclassified	0.86%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.86%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	0.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Oil Reservoir → Unclassified → Unclassified	0.86%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.86%
Unclassified	Host-Associated → Algae → Brown Algae → Unclassified → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.86%
Unclassified	Host-Associated → Fish → Digestive System → Intestine → Unclassified	0.86%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.86%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified → Unclassified	0.86%

Habitat

Habitat	Taxonomy	Distribution
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.86%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.72%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.86%
Biofilm Marine Aquaculture Plant	Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Biofilm Marine Aquaculture Plant	0.86%
Biogas Fermenter	Engineered → Unclassified → Unclassified → Unclassified → Unclassified → Biogas Fermenter	0.86%
Clean Room	Engineered → Unclassified → Unclassified → Unclassified → Unclassified → Clean Room	0.86%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	3.45%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.86%
Food Waste	Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Food Waste	0.86%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	2.59%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	1.72%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	0.86%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	0.86%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.86%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.86%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	1.72%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	0.86%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.86%
Fungus Garden	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden	0.86%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	2.59%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.86%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.86%
Human	Host-Associated → Human → Respiratory System → Nasopharyngeal → Anterior Nares → Human	0.86%
Human Bile Duct	Host-Associated → Human → Excretory System → Liver → Bile → Human Bile Duct	1.72%
Human Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated	0.86%
Hydrocarbon Resource Environments	Environmental → Terrestrial → Oil Reservoir → Unclassified → Unclassified → Hydrocarbon Resource Environments	0.86%
Hypersaline Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Hypersaline Water	2.59%
Lung Microbiome	Host-Associated → Human → Respiratory System → Lung → Unclassified → Lung Microbiome	2.59%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	18.10%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	2.59%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.86%
Marine	Environmental → Aquatic → Marine → Coastal → Sediment → Marine	0.86%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.86%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.86%
Marine Brown Algae (Kelp) Associated	Host-Associated → Algae → Brown Algae → Unclassified → Unclassified → Marine Brown Algae (Kelp) Associated	0.86%
Marine Oceanic	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic	2.59%
Marine Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment	1.72%
Marine Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment	0.86%
Marine Water	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water	0.86%
Meromictic Pond	Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond	0.86%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.86%
Pimephales Promelas Gut	Host-Associated → Fish → Digestive System → Intestine → Unclassified → Pimephales Promelas Gut	0.86%
Polar Desert	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert	1.72%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.86%
Rat Cecum	Host-Associated → Mammals → Digestive System → Large Intestine → Cecum → Rat Cecum	0.86%
Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Rhizosphere	0.86%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment	0.86%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.86%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	4.31%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	0.86%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.59%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.86%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.86%
Subsurface Plume	Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Subsurface Plume	1.72%
Swimming Pool Sandfilter Backwash	Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Swimming Pool Sandfilter Backwash	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.86%
Upper Troposphere	Environmental → Air → Outdoor Air → Unclassified → Unclassified → Upper Troposphere	2.59%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300000519	Amended soil microbial communities from Kansas Great Prairies, USA - acetate and BrdU F2.1B	Environmental
3300001114	Marine microbial communities from the Deep Pacific Ocean - MP1648	Environmental
3300001197	Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes from Sediment core from a heavy oil reservoir,Alberta Canada Inniskillen 614.3	Environmental
3300001286	Groundwater microbial communities from S. Glens Falls, New York, USA - Naphthalene biodegradation metagenome 12C5dose	Environmental
3300001419	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline water (15 m)	Environmental
3300001939	Marine microbial communities from Block Island, New York, USA - GS009	Environmental
3300001964	Marine microbial communities from Rosario Bank, Honduras - GS018	Environmental
3300002149	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_2	Environmental
3300002231	Marine sediment microbial communities from Santorini caldera mats, Greece - red mat	Environmental
3300002242	Marine sediment microbial communities from Kolumbo Volcano mats, Greece - white/grey mat	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
RepKanNP_Acetate_BrdU_F21BDRAFT_10043371	3300000519	Soil	HRVERSFTQSRFETLFFWNLQVEISAALRSMVEKEISSYKN*
RepKanNP_Acetate_BrdU_F21BDRAFT_10057411	3300000519	Soil	VYSTHTVERWFTQSRFETLFLWNLQVEISAALRSMVE
JGI11758J13082_1074101	3300001114	Deep Ocean	VYSSHRVEPSFRQSSFEKFFLWSLQVEISSDLRLIFEMEISSCKNYTE
Draft_10018394	3300001197	Hydrocarbon Resource Environments	STHRVEPSFIQSSFEKHFLWNLQVEISSDLTPILDMEISSY*
JGI12103J14257_1057051	3300001286	Groundwater	EEFSVTSLCCVYSTHRVERSFTQSRLETLFLWNLQVEISAALRSMVE*
JGI11705J14877_102010241	3300001419	Saline Water And Sediment	YTEEFSVIYLWCVYSTHRVEPSFRKSRFETLFLWSFHVEISIALRPKVEKETSSYKN*
GOS2225_10020501	3300001939	Marine	LLEEEFSVTSLCCVYSTHRVERSFTQSRLETLFLWNLQVEISAALSSMVE*
GOS2234_10164583	3300001964	Marine	VYSTDRVELSFRESRFETLFLWNLQVEISSALGPKAVKEISSYKN*
C687J26657_101316111	3300002149	Soil	HRVERSFTQSRLETLFLWNLQVEISSALRPKAEKEISSYKN*
C687J26657_101376272	3300002149	Soil	LSFRESRFETLFLWNLQVEISSALGPKAEKEISSYKN*
KVRMV2_1003564931	3300002231	Marine Sediment	LETGFLHILLEEEFSVTSLCCVYSTHRVEGSFTESRLETLFLWNLQVEISAALRSMVE*
KVWGV2_102487061	3300002242	Marine Sediment	VYSTHRVEPFFRESRVETLCFWNLQVQISSASRPMAEKELS
D0C9_101120992	3300002512	Pimephales Promelas Gut	EEFSVTSLCCVYSTHRVERPFAQSRFETLFLWNLQVEISSDLMPTVEKEISSNKN*
draft_104138131	3300002898	Biogas Fermenter	VYSTDRVELSFGESRFETLFLWNLQVEISSALRPKAEKEISSYKN*
GW671_1010851	3300002974		VEPSFRQSRFESLFLWNLQVEISSALRPKAEKEISSYKN*
JGIcombinedJ50216_10050876	3300003365	Clean Room	VELSFRESRFETLFLWNLQVEISSALGPKAEKEISSYKN*
Ga0063282_10003271	3300003878	Marine	CCVYSTHRVERPFAQSRFETLFLWKLQVEISSDLMPTVEKEISSNKN*
Ga0068511_10263722	3300005057	Marine Water	VYSTHRVEPSFIQSSFETLFLWNLQVEISSDLTPILDTEISSY*
Ga0071350_13644441	3300005069	Freshwater	VYSTHRVEPFFRESRVETLCFWNLQVQISSASRPMAEKEISSYKN
Ga0065704_102165601	3300005289	Switchgrass Rhizosphere	VYSTHRVEPSFIQSSFEKHFLWNLQVEISSDLTPILDMEISS
Ga0074271_1088173	3300005379	Subsurface Plume	THRVERPFAQSRFETLFLWSLQVEISSDLMPTVEKEISSNKN*
Ga0074272_1290101	3300005380	Subsurface Plume	VTSLWCVYSTHRVEPSFRQSRFETPYLCSFQLEISIALRPNVEKETSSYKN*
Ga0078197_1232261	3300005767	Lung Microbiome	DEPSFRKSRFETLFLWSFHVEISIALRPKVEKETSSYKN*
Ga0078381_1469311	3300005771	Lung Microbiome	STDRVEPSFRQSRFETLFLWNLQVEISDALRSMVEKDISSYKNLTE*
Ga0078402_1368221	3300005772	Lung Microbiome	MECPITQSSFETLFLWNLKVENSSDLMPTVEKEISSNKN*
Ga0099364_107751013	3300006226	Termite Gut	HRVELSFTQSRFETLFLWNLQVEISSALRPKAEKEISSYKN*
Ga0075472_104147521	3300006917	Aqueous	TEEFSVTYLWCVYSTHRVEPSFRKSRFETLFLWSFHVEISIALRPKVEKETSSYKN*
Ga0102676_1021671	3300006999	Hypersaline Water	RKSRFETLFLWSFHVEISIALRPKVEKETSSYNN*
Ga0102676_1063131	3300006999	Hypersaline Water	FEPFFRESRVETLFLWNLLVQISNSSKTVIEKDISSY*
Ga0102676_1099951	3300006999	Hypersaline Water	STHRVERSFTQSRLETLFLWNLQVEISAALRSIVEKEISS*
Ga0104854_105649381	3300007643	Biofilm Marine Aquaculture Plant	SLCCVYSTHRVERPFAQSRFETLFLWSLQVEISSDLMPTVEKEISSNKN*
Ga0114311_101691	3300007902	Human	STHRVEPFFTESRFETFFPWNLLVQISNASRTMAEKVISSY*
Ga0117901_11824683	3300009103	Marine	VERPFAQSRFETLFLWSLQVEISSDLMPTVEKEISSNKN*
Ga0115921_11372252	3300009398	Swimming Pool Sandfilter Backwash	VYSTERVELSFRESRFETLFLWNLQVEISSALGPKAEKEISSYKN*
Ga0105228_1149671	3300009613	Marine Oceanic	VEPSFIQSSFEKHFLWNLQVEISSDLTPILDMEISSY*
Ga0105173_11125611	3300009622	Marine Oceanic	FLQSRFETLFLWYLQVEISAALMSMIEKEISSYKN*
Ga0132190_1016621	3300009857	Meromictic Pond	VERPFAQSRFETFFLSNLQVEISSDLMPTVEKEISSN
Ga0136855_1667512	3300010409	Marine Brown Algae (Kelp) Associated	STHRVERPFAQSRFETLFLWSLQVEISSDLMPTVEKEISSNKN*
Ga0137936_10017501	3300010933	Marine Sediment	TKSRFETLFLWNLQVEISSALRPKAEKEISSYKN*
Ga0151661_10046132	3300011261	Marine	PYVMLCRFETLFLWNFQVEISTALRTMVEKEISSYKN*
Ga0136715_10272131	3300012264	Freshwater Sediment	PSFIQSSFETLFLWNLQVEISDALRSMVEKDISSYKNLTE*
Ga0157366_10261291	3300013023	Fungus Garden	VEPSFRKSRFETLFLWSFHVEISIALRPKVEKETSSYKN*
Ga0136641_11223952	3300013286	Freshwater	SFTQSRFETLFLWNLQVEISSALGPKAEKEISSYKN*
Ga0170791_136838351	3300013295	Freshwater	EPSFRKSRFETLFLWSFHVEISIALRPKVEKETSSYKN*
Ga0177922_112362871	3300013372	Freshwater	FTQSRLETLFLWNLQVEISSALRPKAEKEISSYKN*
Ga0177923_11439171	3300013414	Rat Cecum	SLCCVYSTHRVERPFAQRRFETLFLWSLKVEISSDLMPTVEKEISSNKN*
Ga0169859_1072151	3300014597	Human Host-Associated	THRVELSFTQSRFETLFLCNWQVEISSALRSMAEKEISSFQN*
Ga0134334_122181	3300014717	Human Bile Duct	THRDELSFRQSRFETLFSWNLQVEISLALRTMVEKEISSYKN*
Ga0134330_110951	3300014857	Human Bile Duct	THRVEPSFIQSSFETLFLWNFQVEISRDLTPILDMEISSY*
Ga0181339_10051881	3300017700	Freshwater Lake	RDEPSFRKSRFETLFLWSFHVEISIALRPKVEKETSSYNN
Ga0181377_10767811	3300017706	Marine	EPSFRKSRFETLFLWSFHVEISIALRPKVEKETSSYNN
Ga0181388_11273601	3300017724	Seawater	VYSTHRDEPSFRKSRFETLFLWSFHVEISIALRPKVEKE
Ga0181417_11057731	3300017730	Seawater	VEVSFIQSSFETLFLWNLQVEISSDFTPILDMEISSY
Ga0181433_11255012	3300017739	Seawater	TEEFPVTSLCCVCSTHRVELSFTQSRLETLFLWNLQVEISSALRPKAEKEIFSYKN
Ga0181385_10106331	3300017764	Seawater	STHRVEPSFRESRVETLCFWNLQVQISSDSRPMAEKEISSYKN
Ga0181395_11244881	3300017779	Seawater	VYSSQRVEPSFRQSSFEKFFLWDLQVEISSDLRLIFEMEI
Ga0187713_1033121	3300017819	Host-Associated	SEDFSVTSLGCVYATHRVQPSFRQSRFETLFLWNLQVEISSALRPKAEKEISSYKN
Ga0181553_103889651	3300018416	Salt Marsh	VYSTDRVEPSFRQSRFESLFLWNLQVEISSALRPKAEKEIFSYKN
Ga0193021_10020181	3300018527	Marine	SVTSLCCVYSTHRVERPFAQSRFETLFLWNLQVEISSDLMPTVEKEISSNKN
Ga0193415_10173831	3300018608	Marine	CVYSTHRVERPFAQSRFETLFLWSLQVEISSDLMPTVEKEISSNKN
Ga0193577_1079951	3300018624	Marine	VERPFTQSRFETLFLWNLQVEISSDLMPTVEKEIS
Ga0193174_10715861	3300018729	Marine	RVERPFAQSRFETLFLWRLQVEISSDLMPTVEKEISSNKN
Ga0193397_100010172	3300018799	Marine	PFAQSRFETLFLWSLQVEISSDLMPTVEKEISSNKN
Ga0193397_100114311	3300018799	Marine	SLCCVYSTDRVELSFRESRFETLFLWNLQVEISSALGPKAEKEISSYKN
Ga0193475_10193491	3300018855	Marine	VERPFAQSRFETLFLWSLQVEISSDLMPTVEKEIS
Ga0192868_100617242	3300018913	Marine	TSLCCVYSTDRVELSFRESRFETLFLWNLQVEISSALRPKAEKEISSYKN
Ga0193567_100831031	3300018953	Marine	VERPFTQSRFETLFLWSLQVEISSDLMPTVENEISSN
Ga0193094_100352721	3300019016	Marine	TEEFSVTYLWCVYSTHRDEPSFRKSRFETLFLWSFHVEISIALRPKVEKETSSYKN
Ga0192951_100183393	3300019022	Marine	VTSLCCVYSSDRVELSFRESRFETLFLWNLQVEISSALGPKAEKEISSYKN
Ga0193565_100495622	3300019026	Marine	FRESRFETLFLWNLQVEISSALGTKAEKEISSYKN
Ga0192905_101809001	3300019030	Marine	VTSLCCVYSTHRVERPFAQSRFETLFLWSLQVEISSDLMPTVEKEISSNKN
Ga0192869_101108751	3300019032	Marine	THRVERPFRQSRFETLFLRNLQVEISSHLMPTVEREISSNKNQTESFSENSL
Ga0192857_100348182	3300019040	Marine	FTQSRFETLFLWNLQVEISSDLMPTVEKEISSNKN
Ga0193202_10782371	3300019127	Marine	EEFSVTSLCCVYSTHRVERPFAQSRFETLFLWSLQVEISSDLKPTVEKEISSNKN
Ga0193112_11482071	3300019136	Marine	FTQSRFETLFLWSLQVEISSDLMPTVEKEISSNKN
Ga0187794_11522991	3300019273	Peatland	THRDEPSFRKSRFETLFLWSFHVEISIALRPKVEKETSSYKN
Ga0196958_104164832	3300020181	Soil	THRVERPFAQSRFETLFLWNLQVEISSDLMPTVEKEISSNKN
Ga0194127_101830211	3300020221	Freshwater Lake	FTQSRLETLFLWNLQVEISAALRSMVEKEISSYKN
Ga0211511_10474441	3300020349	Marine	TSLCCVYSTHRVERPFAQSRFETLFLWSLQVEISSDLMPTVEKEISSNKN
Ga0194126_102660612	3300020603	Freshwater Lake	RPFAQSRFETLFLWSLQVEISSDLMPTVEKEISSNKN
Ga0196980_10661511	3300021066	Soil	FRKSRFETLFLWSFHVEISIALRPKVEKETSSYKN
Ga0214206_10131763	3300021131	Freshwater	VERPFAQSRFETLFLWSLQVEISSDLMPTVEKEISSNK
(restricted) Ga0233405_100249981	3300023114	Seawater	THRDEPSFRKSRFETLFLWSFHVEISIALRPKVEEETSSYNN
Ga0255814_112411121	3300023205	Food Waste	THRVERPFAQSRFETLFLWSLQVEISSDLMPTVEKEISSNKN
Ga0224535_10399121	3300023258	Soil	YSTHRDEPSFRKSRFETLFLWSFHVEISIALRPKVEKETSSYNN
Ga0210017_10928712	3300025021	Groundwater	PSFIQSSFEKHFLWNLQVEISSDLTPILDMEISSY
Ga0210056_11023962	3300025022	Groundwater	STHRDEPSFRKSRFETLFLWSFHVEISIALRPKVEKETSSYKN
Ga0209615_1014921	3300025075	Freshwater	DEPSFRKSRFETLFLWSFHVEISIALRPKIEKETSSYNN
Ga0209619_105448111	3300025159	Soil	THRVELSFTQSRFETLFLWNLQVEISSALRPKAEKEISSYKN
Ga0209413_10082351	3300025170	Freshwater	SLCCVYSTHRVERPFAQSRFETLFLWSLQVEISSDLMPTVEKEISSNKN
Ga0208208_1103202	3300025177	Deep Ocean	THRVERPFRQSRFETLFLWNLQVEISSDLMPTVEKEISSNKN
Ga0207915_1044013	3300025181	Deep Ocean	VERPFAQSRFETLFLWNLQVEISSDLMPTVEKEISSNK
Ga0208331_1057151	3300025199	Deep Ocean	FTQSRFETLFLWNLQVEISAALRSMVEKEISSYKN
Ga0209002_106078472	3300025289	Soil	PFAQSRFETLFLWNLQVEISSDLMPTVEKEISSNKN
Ga0209520_103167851	3300025319	Soil	VYSTHRVEPCFRESRFETLLLWHFQVEISSDLRTIAEKEI
Ga0208547_11491241	3300025828	Aqueous	ERPFTQSRFETLFLWSLQVEISSDLMPTVEKEISSNKN
Ga0210040_103455171	3300025875	Groundwater	CVCSTHRVELSFTQSRFETLFLWNLQMEISSALRPKAEKEISSYKN
Ga0208452_10120281	3300026104	Marine Oceanic	RVEPSFIQSSFEKHFLWNLQVEISSDLTPILDMEISSY
Ga0209840_10381322	3300026223	Soil	VERPFAQSRFETLFLWNLQVEISSDLMPTVEKEISSN
Ga0209546_10030801	3300026231	Upper Troposphere	STHRVERSFTESRLETLFLWNLQVEISAALRSIVEKEISS
Ga0209545_1036611	3300026232	Upper Troposphere	SVTSLCCVYSTHRVERSFTQSRLETLFLWNLQVEISAALRSIVEKEISS
Ga0209032_1011832	3300026241	Upper Troposphere	ERPFTQSRFEKLFLWSLQVEISSDLMPTVEKEISSNKN
Ga0208431_1032011	3300026682	Deep Subsurface	ERVELSFRESRFETLFLWNLQVEISSALGPKAEKEISSYKN
Ga0208943_1008862	3300026796	Rhizosphere	VYSTHRVEGSFTQSRLETLFLWNLQVEISSALRPKAEKEISSYKK
Ga0209973_10093401	3300027252	Arabidopsis Thaliana Rhizosphere	FSVTSLCCVYSTHRVERPFAQSRFETLFLWNLQVEISSDLMPTVEKEISSNKN
Ga0208493_104091	3300027414	Polar Desert	YSTHRVERPFAQSRFETLFLWSLQVEISSDLMPTVEKEISSNKN
Ga0207953_102491	3300027415	Polar Desert	EEFSVTSLCCVYSTHRVERPFAQSRFETLFLWSLQVEISSDLMPTVEKEISSNKK
Ga0209071_10547462	3300027686	Marine	VERPFAQSRFETLFLWNLQVEISSDLMPTVEKEISANKN
Ga0209071_12184621	3300027686	Marine	CSTHRVELSFTQSRFETLFLWNLQMEVSSALRPKAEKEISSYKN
(restricted) Ga0247833_12243431	3300027730	Freshwater	SFRKSRFETLFLWSFHVEISIALRPKVEKETSSYKN
Ga0209279_100358671	3300027771	Marine	FTQSRFETLFFWNLQVEISAALRSMVEKEISSYKN
Ga0209813_101161741	3300027866	Populus Endosphere	RVERPFAQSRFETLFLWNLQVEISSDLMPTVEKEISSNKN
Ga0228674_11281252	3300028008	Seawater	RDETSFRKSRFETLFLWSFHVEISIALRPKVEKETSSYNN
Ga0210265_10738512	3300030605	Soil	RGELSFRQSRCETLFLGYLQVEISSAFRPNVEKEISSYKN
Ga0302133_101140053	3300031646	Marine	EPSFRKSRFETLFLWSFHVEISIALRPKVEKETSSYKN
Ga0315902_111551731	3300032093	Freshwater	SFRQSRCETLFLGYLQVEISSAFRPNVEKEISSYKN
Ga0268251_105843101	3300032159	Agave	VYSTDRVELSFRESRFETLFLWNLQVEISSALGPKAEKEI