3300025177: Marine microbial communities from the Deep Indian Ocean - MP1091 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025177
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054042 | Ga0208208
• Sample Name: Marine microbial communities from the Deep Indian Ocean - MP1091 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 51051292
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South Indian Ocean
• Coordinates
  • Lat. (^o): -29.81
  • Long. (^o): 82.62
  • Alt. (m): N/A
  • Depth (m): 4000.29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000060	Metagenome / Metatranscriptome	2944	Y
F003507	Metagenome / Metatranscriptome	482	Y
F034189	Metagenome / Metatranscriptome	175	Y
F077438	Metagenome / Metatranscriptome	117	Y
F089570	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208208_101696	All Organisms → cellular organisms → Bacteria	3128
Ga0208208_103850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1825
Ga0208208_104056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1771
Ga0208208_110320	All Organisms → cellular organisms → Bacteria	946

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208208_101696	Ga0208208_1016964	F003507	HFVLPEVLCRFRGRIDEALMNEFVAIQSAVAIDEGLVSPKHLVVDTFPSEQGSQRVTDATTLYKAKKNSLKSQNRSQID
Ga0208208_103850	Ga0208208_1038501	F034189	MTTNLATLASNNGQIIKSGLSDGRRAKFLPSVVGVVYDWLRYECHLGNVGLIK
Ga0208208_104056	Ga0208208_1040561	F089570	MLYSINLLWKRAMQNHCFKFLFFFFCILFLNTKIPLSESERPSLDFNEKQKTIVSNALSNCGDYNFDDLLNTRKKELGISEPDKSINKKKQLDNSLGIEVSRSIETIYTPEQSLANVKKILSSINDDRLYPAVAYYIIKDFAFYEHGLCKSLRNHFQTYNIYKEFYFKTKNKELDPIYENENNLNFFYKNTSNARKRLLLAIQSKKRLLEKEQFLLKNLKIFTETYI
Ga0208208_110320	Ga0208208_1103202	F077438	THRVERPFRQSRFETLFLWNLQVEISSDLMPTVEKEISSNKN
Ga0208208_121564	Ga0208208_1215641	F000060	KSFLEGRIRALALEEVSKLKHQAKLSKLNYLKNGGEGLEHEILELKAEILEADSHQGSLDEAFELTHDEIKILKKLIKELYAIAEPTRIKGYTDEQMFEANAANEFTVNMGREIQSEMIANGRPSAARIRNAMSNPHTWNALKQVGLIPNKTKILEGNIDPQLKIELKGVEDETV