3300009857: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 4, 6m depth; RNA IDBA-UD

Overview

Basic Information

• IMG/M Taxon OID: 3300009857
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116874 | Gp0151141 | Ga0132190
• Sample Name: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 4, 6m depth; RNA IDBA-UD
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 4753154
• Sequencing Scaffolds: 3
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → meromictic pond → pond water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Falmouth, Massachusetts
• Coordinates
  • Lat. (^o): 41.548517
  • Long. (^o): -70.622961
  • Alt. (m): N/A
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000077	Metagenome / Metatranscriptome	2584	Y
F000237	Metagenome / Metatranscriptome	1498	Y
F005974	Metagenome / Metatranscriptome	384	Y
F077438	Metagenome / Metatranscriptome	117	Y
F078755	Metatranscriptome	116	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0132190_101657	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	540
Ga0132190_101662	All Organisms → cellular organisms → Bacteria	539
Ga0132190_101672	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	538

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0132190_100333	Ga0132190_1003331	F000237	TDQLTRLMVLHYFTP*YYLYLVKLHVMFCHES*DSDSGENVYEDKSGTYVS*FYDAFLKEIQDA*Y*TLYVFVYFIIHHFDASTVNYFFFER*NISELDEIRFYGVAPH*YFRPLMGLLVVSPSHYEGLM*MALWFVLLASLPIIYNFYNSSKYYLPIIPMQSSMSQTLCFILFMLSMYCTASMLPCGRYYYAPEGGYVGNP*VKFSYQYAYLYMA*ILHHLDIIEH*GFRYTQNLLRRCSNISKISKKRMQVLSITHMSQYRRNRKAELTFTNSYKLNMA*NSSIKYIKR*
Ga0132190_101657	Ga0132190_1016571	F078755	SIRSRNNMQGFLALAVTIAVVAADSGYAPAPEYLCRDTNTSIYAEVCVPAFAEQITPVTLAVKEVVDNDYCFDRVLTVCEETSSFVDREICTYEYAREDVVADCTTTQVTYAEKSETMKVTTCSASGYGTPGYGAGEHQYCREEYQTQAYRVPLVTEPKLESCKLAYPAPSKVCVTKTL
Ga0132190_101662	Ga0132190_1016621	F077438	VERPFAQSRFETFFLSNLQVEISSDLMPTVEKEISSN
Ga0132190_101672	Ga0132190_1016721	F005974	GNFVRFSLDEFLRGNPLERAQVYEILNRIGAMSVEEIRKEEDLLK*
Ga0132190_101986	Ga0132190_1019861	F000077	DAALLTKEIAELDEDITIWKGDIKAATKVREIEKADYDALHKDYSESIDALQRAIAVLKKQAYDRKQASFVQVAALKNLNLIPADAKKAIDLFLMQDPEGLAVSAPEANAYEFQSSGVIEMLEKLLDKFIDERTTLEKEEMNSKHAYDMLMQDLTAQIAQATQDRDEK